View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254-INSERTION-9 (Length: 291)
Name: NF0254-INSERTION-9
Description: NF0254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254-INSERTION-9 |
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| [»] scaffold0060 (2 HSPs) |
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| [»] scaffold1657 (1 HSPs) |
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Alignment Details
Target: scaffold0060 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 72883 - 72642
Alignment:
| Q |
7 |
atcatctacaattattctcctagattcacgatgaattaataaatcgttctgatcaatctcttgactcataatcctcttcttataaggttacaatccattt |
106 |
Q |
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| T |
72883 |
atcatctacaattattctcctagattcacgatgaattaataaatcgttcagatcaatctcttgactcggaatcctcttct---aaggttacaatccattt |
72787 |
T |
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| Q |
107 |
aggtgaatttgtaacagttgaagggtttactagaacgttaattcttagatcataacctagcaatcatctatctctagtctgacccgttaattaaattaac |
206 |
Q |
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| T |
72786 |
aggtgaatttgtaacagttgaagggtttactagaacgttaattcttagatcataacctaacaatcatctatctctagtctgacccattaattaaattaac |
72687 |
T |
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| Q |
207 |
cagaaatattaggtctaattcgatagttatagctagtagtcaatt |
251 |
Q |
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| T |
72686 |
cagaaatattaggtctaattcgatagttatggctagtagtcaatt |
72642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 291
Target Start/End: Complemental strand, 72916 - 72878
Alignment:
| Q |
253 |
tctctattgttcgttgttcagtaaattgcacttatcatc |
291 |
Q |
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| T |
72916 |
tctctattgctcgttgttcaataaattgcacttatcatc |
72878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 8438084 - 8438325
Alignment:
| Q |
7 |
atcatctacaattattctcctagattcacgatgaattaataaatcgttctgatcaatctcttgactcataatcctcttcttataaggttacaatccattt |
106 |
Q |
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| T |
8438084 |
atcatctacaattattctcctagattcacgatgaattaataaatcgttctgataaatctcttgactcagaatcctcttctaat---gttacaatctattt |
8438180 |
T |
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| Q |
107 |
aggtgaatttgtaacagttgaagggtttactagaacgttaattcttagatcataacctagcaatcatctatctctagtctgacccgttaattaaattaac |
206 |
Q |
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| T |
8438181 |
agatgaatttgtaacagttgaaaggtttactagaacgttaattcttagatcataacctaacaatcatctatctctagtttgacccgttaattaaattaac |
8438280 |
T |
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| Q |
207 |
cagaaatattaggtctaattcgatagttatagctagtagtcaatt |
251 |
Q |
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| T |
8438281 |
cagaaatattaggtctaatttgatagttatggctagtagtcaatt |
8438325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1657 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1657
Description:
Target: scaffold1657; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 609 - 702
Alignment:
| Q |
138 |
agaacgttaattcttagatcataacctagcaatcatctatctctagtctgacccgttaattaaattaaccagaaatattaggtctaattcgatagtta |
235 |
Q |
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|||||||||||| || |||||||||| |||||||||||| |||| ||||||||||| ||||||||||| |||||| || ||||| ||||||| |
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| T |
609 |
agaacgttaatttctatgtcataacctaacaatcatctatccctagactgacccgttag----attaaccagaattattagatccaattcaatagtta |
702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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