View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0254_1D_high_1 (Length: 653)

Name: NF0254_1D_high_1
Description: NF0254_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0254_1D_high_1
NF0254_1D_high_1
[»] chr4 (4 HSPs)
chr4 (18-632)||(2901798-2902412)
chr4 (18-632)||(2882601-2883229)
chr4 (292-421)||(2872696-2872825)
chr4 (18-101)||(2872944-2873027)
[»] chr2 (6 HSPs)
chr2 (290-396)||(44226627-44226733)
chr2 (290-396)||(44237425-44237531)
chr2 (18-99)||(44226436-44226517)
chr2 (292-394)||(44214479-44214581)
chr2 (18-99)||(44237234-44237315)
chr2 (18-102)||(44214266-44214350)
[»] chr7 (10 HSPs)
chr7 (278-367)||(39592837-39592926)
chr7 (35-100)||(39333840-39333905)
chr7 (20-92)||(39592655-39592727)
chr7 (290-348)||(39568854-39568912)
chr7 (278-348)||(39584075-39584145)
chr7 (39-100)||(39345119-39345180)
chr7 (39-88)||(39551815-39551864)
chr7 (26-91)||(39578189-39578254)
chr7 (39-91)||(39359673-39359725)
chr7 (311-367)||(42177690-42177746)


Alignment Details
Target: chr4 (Bit Score: 607; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 18 - 632
Target Start/End: Original strand, 2901798 - 2902412
Alignment:
Q  18 acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccagatacctttagaacacaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2901798 acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccagatacctttagaacacaat 2901897  T
Q  118 gtcatggaatttattgtttgttaaaatgacgtaggtactcgaggggatttgaactttgtcccttaagattattaggtcatgtttttattactgaactgaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2901898 gtcatggaatttattgtttgttaaaatgacgtaggtactcgaggggatttgaactttgtcccttaagattattaggtcatgtttttattactgaactaaa 2901997  T
Q  218 acctcatgaacagcgaaagagaacagtatatattaatgaaattaagagaaaatgattttcaccttgagattgggatcaagctttcctgacaaagctaaaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2901998 acctcatgaacagcgaaagagaacagtatatattaatgaaattaagagaaaatgattttcaccttgagattgggatcaagctttcctgacaaagctaaaa 2902097  T
Q  318 gaagtgtggtctttccagaacttggaggaccaagaagaagtgtcatcctgcgaggtttgactattccacttacatctttgaggatagtcatatgtttctt 417  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2902098 gaagtgtggtctttccagaacttggaggaccaagaagcagtgtcatcctgcgaggtttgactattccacttacatctttgaggatagtcatatgtttctt 2902197  T
Q  418 tttgctagtgaaaatatggagataagtcaagatactctgaaagaccaaagaaagcatggttatgagactaattgcaaagtaaagaaacaacaaaagctga 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2902198 tttgctagtgaaaatatggagataagtcaagatactctgaaagaccaaagaaagcatggttatgagactaattgcaaagtaaagaaacaacaaaagctga 2902297  T
Q  518 gaaagtagaatctggttatatttacctcgactgcattcataactgagttcaacaaagttggtaaagccctgcctccaacataagcttccgcgtcaacaat 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2902298 gaaagtagaatctggttatatttacctcgactgcattcataactgagttcaacaaagttggtaaagccctgcctccaacataagcttccgcgtcaacaat 2902397  T
Q  618 taaatgctcatatct 632  Q
    |||||||||||||||    
T  2902398 taaatgctcatatct 2902412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 632
Target Start/End: Complemental strand, 2883229 - 2882601
Alignment:
Q  18 acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccagatacctttagaacacaat 117  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||  || ||||||     
T  2883229 acatcatgttgactaatatatgcagcagttctctgaggtacaaattcatccatcccatgtccattataagttactctccctgatacctggaggacacaac 2883130  T
Q  118 gtcatggaatttattgtttgttaaaatgacg----tag-------------gtactcgaggggatttgaactttgtcccttaagattattaggtcatgtt 200  Q
    | ||| ||| ||||| ||| | ||| |||      |||             ||||||||||||||||||||||| |||||||||||||| |||||| |||    
T  2883129 gacatcgaagttattatttatgaaagtgagacaaatagtcattttaataccgtactcgaggggatttgaactttctcccttaagattataaggtcaagtt 2883030  T
Q  201 tttattactgaactgaaacctcatgaacagcgaaagagaacagtatatattaatgaaattaagagaaaatgattttcaccttgagattgggatcaagctt 300  Q
    ||||  |||||||||||||| | ||||||| ||||||||||| ||||||||  ||||||||||||||| |  ||||||||||||||||||||||||||||    
T  2883029 tttaccactgaactgaaaccccgtgaacagtgaaagagaacaatatatatttgtgaaattaagagaaatttcttttcaccttgagattgggatcaagctt 2882930  T
Q  301 tcctgacaaagctaaaagaagtgtggtctttccagaacttggaggaccaagaagaagtgtcatcctgcgaggtttgactattccacttacatctttgagg 400  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  2882929 tcctgacaaagccaaaagaagtgtggtctttccagaacttggaggaccaagaagcagtgtcatcctgcgaggtttgactattccacttacatctttaagg 2882830  T
Q  401 atagtcatatgtttctttttgctagtgaaaatatggagataagtcaagatactctgaaagaccaaag--aaagcatggttatgagactaattgcaaagta 498  Q
    |||||||| ||||||||| |||| |||| |||||||||  || ||||||||||||||||||||||||  |||  |  |||||||||||||||||          
T  2882829 atagtcatttgtttctttctgcttgtgagaatatggagggaaatcaagatactctgaaagaccaaagaaaaaaaaaagttatgagactaattgc-----g 2882735  T
Q  499 aagaaacaacaaaagctgagaaagtagaatctggttatatttacctcgactgcattcataactgagttcaacaaagttggtaaagccctgcctccaacat 598  Q
    ||  ||||| || | ||||||||||||||||||||| |||||||||||||||  ||  |||| ||||||||||||||||| |||||||||||||| |||     
T  2882734 aaacaacaataacaactgagaaagtagaatctggttgtatttacctcgactgtgttagtaaccgagttcaacaaagttggcaaagccctgcctcccacaa 2882635  T
Q  599 aagcttccgcgtcaacaattaaatgctcatatct 632  Q
    ||||||| || |||||| |||  |||||||||||    
T  2882634 aagcttctgcctcaacatttaggtgctcatatct 2882601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 292 - 421
Target Start/End: Complemental strand, 2872825 - 2872696
Alignment:
Q  292 atcaagctttcctgacaaagctaaaagaagtgtggtctttccagaacttggaggaccaagaagaagtgtcatcctgcgaggtttgactattccacttaca 391  Q
    |||||||||||| |  || || |||||||||||||||||||| |||||||||||||||||||| |||| |||||| | ||||||||||||||||||||||    
T  2872825 atcaagctttccagttaaggccaaaagaagtgtggtctttccggaacttggaggaccaagaagcagtgccatcctaccaggtttgactattccacttaca 2872726  T
Q  392 tctttgaggatagtcatatgtttctttttg 421  Q
    ||||| ||||||||||||||||||||||||    
T  2872725 tctttaaggatagtcatatgtttctttttg 2872696  T

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Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 2873027 - 2872944
Alignment:
Q  18 acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccagat 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||    
T  2873027 acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccattccatatccattataagtcactctaccagat 2872944  T

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Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 290 - 396
Target Start/End: Original strand, 44226627 - 44226733
Alignment:
Q  290 ggatcaagctttcctgacaaagctaaaagaagtgtggtctttccagaacttggaggaccaagaagaagtgtcatcctgcgaggtttgactattccactta 389  Q
    |||||||||||||| || || ||||||||||||||||||||||| ||||  |||||||| | ||| ||||||||||| |||||||| || ||||| || |    
T  44226627 ggatcaagctttccagataaggctaaaagaagtgtggtctttcctgaaccaggaggacctaaaagtagtgtcatcctacgaggtttaacgattccgctaa 44226726  T
Q  390 catcttt 396  Q
    |||||||    
T  44226727 catcttt 44226733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 290 - 396
Target Start/End: Original strand, 44237425 - 44237531
Alignment:
Q  290 ggatcaagctttcctgacaaagctaaaagaagtgtggtctttccagaacttggaggaccaagaagaagtgtcatcctgcgaggtttgactattccactta 389  Q
    |||||||||||||| || || ||||| ||||| ||||||||||| ||||  |||||||| | ||| ||||||||||| |||||||| || ||||| || |    
T  44237425 ggatcaagctttccagataaggctaacagaagcgtggtctttcctgaaccaggaggacctaaaagtagtgtcatcctacgaggtttaacaattccgctaa 44237524  T
Q  390 catcttt 396  Q
    |||||||    
T  44237525 catcttt 44237531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 44226436 - 44226517
Alignment:
Q  18 acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccag 99  Q
    ||||||||||| || ||||| ||||||||||||||||||||||| |||| ||  ||||| ||||| |||||||| |||||||    
T  44226436 acatcatgttggcttatataggcagcagttctttgaggtacaaactcattcagtccatggccattgtaagtcacactcccag 44226517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 292 - 394
Target Start/End: Original strand, 44214479 - 44214581
Alignment:
Q  292 atcaagctttcctgacaaagctaaaagaagtgtggtctttccagaacttggaggaccaagaagaagtgtcatcctgcgaggtttgactattccacttaca 391  Q
    ||||||||||||||| ||||||||||| |||||||| ||||| ||||  |||||||| |  || | ||||||||| |||||||| |  |||||||| |||    
T  44214479 atcaagctttcctgataaagctaaaagtagtgtggtttttcctgaaccaggaggacctaagagtaatgtcatcctacgaggtttaataattccactaaca 44214578  T
Q  392 tct 394  Q
    |||    
T  44214579 tct 44214581  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 44237234 - 44237315
Alignment:
Q  18 acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccag 99  Q
    ||||||||||| || ||||| || |||||||||||||||||||| || | ||  ||||| ||||| |||||||| |||||||    
T  44237234 acatcatgttggctgatataagccgcagttctttgaggtacaaactcgttcagtccatggccattgtaagtcacactcccag 44237315  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 44214266 - 44214350
Alignment:
Q  18 acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccagata 102  Q
    |||||||| || || ||||| ||||||||||||||||||||||| |||| ||  || |||||||| || |||||  |||||||||    
T  44214266 acatcatgctggctgatataagcagcagttctttgaggtacaaactcattcagtccgtgtccattgtaggtcacattcccagata 44214350  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 278 - 367
Target Start/End: Original strand, 39592837 - 39592926
Alignment:
Q  278 accttgagattgggatcaagctttcctgacaaagctaaaagaagtgtggtctttccagaacttggaggaccaagaagaagtgtcatcctg 367  Q
    ||||| || ||||||||||| || || | |||||| || ||||||||||||||||||||||||||||| || ||||| | ||||||||||    
T  39592837 acctttagcttgggatcaagtttgccagccaaagccaagagaagtgtggtctttccagaacttggaggtcccagaagcaatgtcatcctg 39592926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 39333905 - 39333840
Alignment:
Q  35 atatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccaga 100  Q
    |||||||||||||||||| || |||||||||  |||| |||| |||||||||||||| || |||||    
T  39333905 atatgcagcagttctttgggggacaaattcactcatctcatgaccattataagtcacccttccaga 39333840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 39592655 - 39592727
Alignment:
Q  20 atcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcact 92  Q
    ||||| |||||| | ||| |||||||||||||| ||||||||||| | |||| |||| ||||||||| |||||    
T  39592655 atcattttgactgacataagcagcagttctttggggtacaaattctttcatctcatgaccattataactcact 39592727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 348
Target Start/End: Original strand, 39568854 - 39568912
Alignment:
Q  290 ggatcaagctttcctgacaaagctaaaagaagtgtggtctttccagaacttggaggacc 348  Q
    |||||||| ||||| | |||||| || || |||||||| ||||||||||||||||||||    
T  39568854 ggatcaagttttccggccaaagccaataggagtgtggtttttccagaacttggaggacc 39568912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 39584075 - 39584145
Alignment:
Q  278 accttgagattgggatcaagctttcctgacaaagctaaaagaagtgtggtctttccagaacttggaggacc 348  Q
    ||||| || ||||||||||| ||||| | ||| || ||||| ||||| || ||||||||||||||||||||    
T  39584075 acctttagcttgggatcaagttttccagccaaggccaaaaggagtgttgtttttccagaacttggaggacc 39584145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 39345180 - 39345119
Alignment:
Q  39 gcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccaga 100  Q
    |||||||||||||| || |||||||||  |||| |||| |||||||||||||| || |||||    
T  39345180 gcagcagttctttgggggacaaattcactcatctcatgaccattataagtcacccttccaga 39345119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 39551815 - 39551864
Alignment:
Q  39 gcagcagttctttgaggtacaaattcatccatcccatgtccattataagt 88  Q
    ||||||||||||||||| ||||| |||| |||| |||| |||||||||||    
T  39551815 gcagcagttctttgaggcacaaactcattcatctcatgaccattataagt 39551864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 39578189 - 39578254
Alignment:
Q  26 ttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcac 91  Q
    |||||| | ||| ||||||||||||||||||||||| |||| |||| |||| || || ||||||||    
T  39578189 ttgactgacataagcagcagttctttgaggtacaaactcattcatctcatgaccgttgtaagtcac 39578254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 39359725 - 39359673
Alignment:
Q  39 gcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcac 91  Q
    |||||||||||||| |||||||| |||  |||| |||| ||||||||||||||    
T  39359725 gcagcagttctttggggtacaaactcactcatctcatgaccattataagtcac 39359673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 311 - 367
Target Start/End: Original strand, 42177690 - 42177746
Alignment:
Q  311 gctaaaagaagtgtggtctttccagaacttggaggaccaagaagaagtgtcatcctg 367  Q
    |||||||| | ||| || |||||||||| ||||||||| ||||| ||||||||||||    
T  42177690 gctaaaagcaatgttgtttttccagaacctggaggacctagaaggagtgtcatcctg 42177746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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