View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_1D_high_12 (Length: 209)
Name: NF0254_1D_high_12
Description: NF0254_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_1D_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 7279008 - 7278837
Alignment:
| Q |
14 |
ttctgctcttagggacttgagaaagtcgattatcaaaagggctatagttctgcaagaatttgttgatcaaattcaaatggtgggtcccacagaggaagtt |
113 |
Q |
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| T |
7279008 |
ttctgctcttagggacttgagaaagtcgattatcaaaagggctattgttcttcaagaatttgttgatcaaattcaaatggtgggtcccacagaggaagtt |
7278909 |
T |
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| Q |
114 |
gaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagag |
185 |
Q |
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| T |
7278908 |
gaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagag |
7278837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 7374831 - 7375002
Alignment:
| Q |
14 |
ttctgctcttagggacttgagaaagtcgattatcaaaagggctatagttctgcaagaatttgttgatcaaattcaaatggtgggtcccacagaggaagtt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7374831 |
ttctgctcttagggacttgagaaagtcgattatcaaaagggctattgttcttcaagaatttgttgatcaaattcaaatggtgggtcccacagaggaagtt |
7374930 |
T |
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| Q |
114 |
gaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagag |
185 |
Q |
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| T |
7374931 |
gaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagag |
7375002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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