View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_1D_high_4 (Length: 409)
Name: NF0254_1D_high_4
Description: NF0254_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_1D_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 7 - 404
Target Start/End: Original strand, 9839327 - 9839724
Alignment:
| Q |
7 |
gtttccaccaagtaccaactcaattttcaacatgtatgatgatggaagcagataattgcaaatccactaactcaatttccatgaacttcagagtagctaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9839327 |
gtttccaccaagtaccaactcaattttcaacatgtatgatgatggaagcagataattgcaaatccactaactcaatttccatgaacttcagagtagctaa |
9839426 |
T |
|
| Q |
107 |
cattattatggattctgaaaagactatgcactaaattacgctagtagcaaaagcatttttactctaccatttgtgtgagcttgcatttggggtcaaactg |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
9839427 |
cattattatggattctgaaaagactatgcactaaattacgctagtagcaaaagcatttttactgtaccatttgtgtgagcttgcatttgaggtcaaactg |
9839526 |
T |
|
| Q |
207 |
ctggccaaccaaaacaaagatatttgggagactatccaaaacaatagtgtcttttgtctttaaaccatcatcgaaaaagtcgttacctctgttaactcaa |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9839527 |
ctggccaaccaaaacaaagatatttgggagactatccaaaacaatagtgtcttttgtctttaaaccatcttcgaaaaagtcgttacctctgttaactcaa |
9839626 |
T |
|
| Q |
307 |
ccagtagatgaatgtaagtatttctcatcttcatgtatttctgcaaaataaatcaaattactaatagtcataagtagtatgccacacaaacaccaaac |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9839627 |
ccagtagatgaatgtaagtatttctcatcttcatgtatttctgcaaaataaatcaaattactaatagtcataagtagtatgccacacaaacaccaaac |
9839724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 94
Target Start/End: Original strand, 9839239 - 9839273
Alignment:
| Q |
60 |
aattgcaaatccactaactcaatttccatgaactt |
94 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
9839239 |
aattccaaatccactaactcaatttccatgaactt |
9839273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 52 - 177
Target Start/End: Original strand, 6852634 - 6852759
Alignment:
| Q |
52 |
aagcagataattgcaaatccactaactcaatttccatgaacttcagagtagctaacattattatggattctgaaaagactatgcactaaattacgctagt |
151 |
Q |
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|||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||| || |||||| |||||||||| |||||||||| | | || |
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| T |
6852634 |
aagcagataattccaaatccaccaactcaatttccatgcacttcagagtagctaacattatcatagattctaaaaagactatccactaaattatgttggt |
6852733 |
T |
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| Q |
152 |
agcaaaagcatttttactctaccatt |
177 |
Q |
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||||||| || |||||| ||||||| |
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| T |
6852734 |
agcaaaaccagttttaccataccatt |
6852759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 6852515 - 6852551
Alignment:
| Q |
60 |
aattgcaaatccactaactcaatttccatgaacttca |
96 |
Q |
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|||| ||||||||||||||||||||||||| |||||| |
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| T |
6852515 |
aattccaaatccactaactcaatttccatggacttca |
6852551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 24352149 - 24352080
Alignment:
| Q |
7 |
gtttccaccaagtaccaactcaattttcaacatgtatgatgatggaagcagataattgcaaatccactaa |
76 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24352149 |
gtttccaccaagtactaactcaattttcaacatgtatgatgatggaagcagataattccaaatccactaa |
24352080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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