View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0254_1D_high_9 (Length: 260)
Name: NF0254_1D_high_9
Description: NF0254_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0254_1D_high_9
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 28 - 244
Target Start/End: Complemental strand, 16842973 - 16842757
Alignment:
Q
28
gtaatgacatcaaccaagccttgtttcttaggcataaaatacaacctccgcacaacaatgctatatgcaatcacatccaacgaatttggtgaagaagaca
127
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
16842973
gtaatgacatcaaccaagccttgtttcttaggcataaaatacaacctccgcacaacaatgctatatgcaatcacatccaacgaatttggtgaagaagaca
16842874
T
Q
128
tcttcaactttagatgtaacatctctgcatctttgaagcgtcccataacactataaatatcgatccttgtacaaacaatgtgcttgttcagcttcttctc
227
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
16842873
tcttcaactttagatgtaacatctctgcatctttgaagcgtcccataacactataaatatcgatccttgtacaaacaatgtgcttgttcagcttcttctc
16842774
T
Q
228
gtcagcatcacttttca
244
Q
|||||||||||||||||
T
16842773
gtcagcatcacttttca
16842757
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 74 - 244
Target Start/End: Complemental strand, 24209839 - 24209669
Alignment:
Q
74
tccgcacaacaatgctatatgcaatcacatccaacgaatttggtgaagaagacatcttcaactttagatgtaacatctctgcatctttgaagcgtcccat
173
Q
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||
T
24209839
tccgcacaacaatgctatatgcaatcatatccaacgaatttggtgaagaagacttcttcaactttagatacaacatctctgcatctttgaagcatcccat
24209740
T
Q
174
aacactataaatatcgatccttgtacaaacaatgtgcttgttcagcttcttctcgtcagcatcacttttca
244
Q
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
T
24209739
gacactataaatatcgatcattgtacaaacaatgtgcttgttcagcttcttctcgtcagcattacttttca
24209669
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 24210236 - 24210191
Alignment:
Q
31
atgacatcaaccaagccttgtttcttaggcataaaatacaacctcc
76
Q
|||||||||||||||||||||||||||| |||||||||||||||||
T
24210236
atgacatcaaccaagccttgtttcttagccataaaatacaacctcc
24210191
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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