View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0254_1D_low_10 (Length: 319)

Name: NF0254_1D_low_10
Description: NF0254_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0254_1D_low_10
NF0254_1D_low_10
[»] chr6 (19 HSPs)
chr6 (22-313)||(10578984-10579274)
chr6 (22-313)||(6596120-6596411)
chr6 (70-206)||(6423833-6423969)
chr6 (69-116)||(6436835-6436882)
chr6 (69-116)||(7993631-7993678)
chr6 (158-208)||(6395553-6395603)
chr6 (71-114)||(6432759-6432802)
chr6 (158-208)||(6410711-6410761)
chr6 (71-123)||(9412050-9412102)
chr6 (69-109)||(19633024-19633064)
chr6 (74-113)||(6410627-6410666)
chr6 (71-197)||(7132234-7132360)
chr6 (71-197)||(7138080-7138206)
chr6 (158-208)||(19633116-19633166)
chr6 (69-114)||(6403502-6403547)
chr6 (71-116)||(7135157-7135202)
chr6 (160-197)||(7135246-7135283)
chr6 (277-313)||(6423989-6424025)
chr6 (160-208)||(14809717-14809765)
[»] chr5 (1 HSPs)
chr5 (74-122)||(17205662-17205710)
[»] chr1 (3 HSPs)
chr1 (70-118)||(30827723-30827771)
chr1 (71-123)||(7555124-7555176)
chr1 (69-112)||(33161122-33161165)
[»] chr4 (2 HSPs)
chr4 (76-113)||(10633967-10634004)
chr4 (158-206)||(553775-553823)
[»] chr8 (1 HSPs)
chr8 (77-120)||(32151900-32151943)


Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 22 - 313
Target Start/End: Complemental strand, 10579274 - 10578984
Alignment:
Q  22 tccattcttgaaaatagtttgacttttgagaatagggcaactgagttcgaggttgagttctttgagcaatgggaaacaatcggcaatgagtaacaagtca 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10579274 tccattcttgaaaatagtttgacttttgagaatagggcaactgagttcgaggttgagttctttgagcaatgggaaacaatcggcaacgagtaacaagtca 10579175  T
Q  122 tttttgtataggaagtcagtagaacaagtaaaacatgtcaaagttgttatgttttgggagaaagcttgcaacccatctgtgggaaagatgctttcgccgg 221  Q
    |||||||| || ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  10579174 tttttgtagagaaagtcagtagaacaagtgaaacttgtcaaagttgttatgttttgggagaaagctcgtaacccatctgtgggaaagatgctttcgccgg 10579075  T
Q  222 agagtgctagcgagttgagtttctcaaacgggaacttaggttcaccggagagaacgagcgatgtgagtttcttcaacgggaaactagagatt 313  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  10579074 agagagctagcgagttgagtttctcaaacgggaacttaggttcaccggagagaacgagcgatgtgagtttcttcaac-ggaaactagtgatt 10578984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 22 - 313
Target Start/End: Complemental strand, 6596411 - 6596120
Alignment:
Q  22 tccattcttgaaaatagtttgacttttgagaatagggcaactgagttcgaggttgagttctttgagcaatgggaaacaatcggcaatgagtaacaagtca 121  Q
    ||||||||||||| ||||||||| || || |||||||  | ||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6596411 tccattcttgaaattagtttgacattggaaaatagggttattgatttcgatgttgagttctttgagcaatgggaaacaatcagcaatgagtaacaagtca 6596312  T
Q  122 tttttgtataggaagtcagtagaacaagtaaaacatgtcaaagttgttatgttttgggagaaagcttgcaacccatctgtgggaaagatgctttcgccgg 221  Q
    |||||||| || ||||   |||||||||| | | | ||||||||||||||||||||||||||| || ||||||| || | ||||||||||||||||||||    
T  6596311 tttttgtagagaaagtttatagaacaagtgagagaggtcaaagttgttatgttttgggagaaaactcgcaacccgtcagcgggaaagatgctttcgccgg 6596212  T
Q  222 agagtgctagcgagttgagtttctcaaacgggaacttaggttcaccggagagaacgagcgatgtgagtttcttcaacgggaaactagagatt 313  Q
    ||||  | ||||| || ||||||| ||| |||||  ||||||| |||| || ||||||  ||||||||||||||||||||||||||||||||    
T  6596211 agagaacgagcgatttaagtttcttaaatgggaatctaggttcgccggtgaaaacgagaaatgtgagtttcttcaacgggaaactagagatt 6596120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 206
Target Start/End: Original strand, 6423833 - 6423969
Alignment:
Q  70 gaggttgagttctttgagcaatgggaaacaatcggcaatgagtaacaagtcatttttgtataggaagtcagtagaacaagtaaaacatgtcaaagttgtt 169  Q
    |||||||||||||||||||||||||||||||| ||| |  ||||||| |||  | ||| | || ||     || ||||||| | | | ||||||||||||    
T  6423833 gaggttgagttctttgagcaatgggaaacaattggccacaagtaacaggtcggtgttggagagaaacatgctataacaagtgagagaggtcaaagttgtt 6423932  T
Q  170 atgttttgggagaaagcttgcaacccatctgtgggaa 206  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  6423933 atgttttgggagaaagctcgcaacccatttgtgggaa 6423969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 6436835 - 6436882
Alignment:
Q  69 cgaggttgagttctttgagcaatgggaaacaatcggcaatgagtaaca 116  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||    
T  6436835 cgaggttgagttgtttgagcaaagggaaacaatcggcaatgagtaaca 6436882  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 7993678 - 7993631
Alignment:
Q  69 cgaggttgagttctttgagcaatgggaaacaatcggcaatgagtaaca 116  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||    
T  7993678 cgaggttgagttctttgagcaaagggaaacaattggcaatgagtaaca 7993631  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 6395553 - 6395603
Alignment:
Q  158 gtcaaagttgttatgttttgggagaaagcttgcaacccatctgtgggaaag 208  Q
    ||||||||||| || |||||||||| |||||||||||||||||||||||||    
T  6395553 gtcaaagttgtaatattttgggagagagcttgcaacccatctgtgggaaag 6395603  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 6432759 - 6432802
Alignment:
Q  71 aggttgagttctttgagcaatgggaaacaatcggcaatgagtaa 114  Q
    |||||||||| ||||||||| |||||||||||||||||||||||    
T  6432759 aggttgagttgtttgagcaaagggaaacaatcggcaatgagtaa 6432802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 6410711 - 6410761
Alignment:
Q  158 gtcaaagttgttatgttttgggagaaagcttgcaacccatctgtgggaaag 208  Q
    ||||||||||| ||||||||||||||| |||||||||||| | ||||||||    
T  6410711 gtcaaagttgtaatgttttgggagaaaacttgcaacccatttatgggaaag 6410761  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 9412050 - 9412102
Alignment:
Q  71 aggttgagttctttgagcaatgggaaacaatcggcaatgagtaacaagtcatt 123  Q
    |||||||||||||  ||||| |||||||| || ||||||||||||||||||||    
T  9412050 aggttgagttcttcaagcaaagggaaacattcagcaatgagtaacaagtcatt 9412102  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 19633024 - 19633064
Alignment:
Q  69 cgaggttgagttctttgagcaatgggaaacaatcggcaatg 109  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  19633024 cgaggttgagttctttcaacaatgggaaacaatcggcaatg 19633064  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 113
Target Start/End: Original strand, 6410627 - 6410666
Alignment:
Q  74 ttgagttctttgagcaatgggaaacaatcggcaatgagta 113  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  6410627 ttgagttctttgagcaatgggaaacaatcagcaaagagta 6410666  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 197
Target Start/End: Original strand, 7132234 - 7132360
Alignment:
Q  71 aggttgagttctttgagcaatgggaaacaatcggcaatgagtaacaagtcatttttgtataggaagtcagtagaacaagtaaaacatgtcaaagttgtta 170  Q
    |||||||||||||| |||| ||| |||||||||||||| |||||||  || || ||||| || ||     | ||||||   | | ||| ||||||||| |    
T  7132234 aggttgagttctttaagcattggaaaacaatcggcaataagtaacagatcgttgttgtagagaaacatgttggaacaatcgagagatgccaaagttgtaa 7132333  T
Q  171 tgttttgggagaaagcttgcaacccat 197  Q
    ||||||||||||||||| |||||||||    
T  7132334 tgttttgggagaaagctcgcaacccat 7132360  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 197
Target Start/End: Original strand, 7138080 - 7138206
Alignment:
Q  71 aggttgagttctttgagcaatgggaaacaatcggcaatgagtaacaagtcatttttgtataggaagtcagtagaacaagtaaaacatgtcaaagttgtta 170  Q
    |||||||||||||| |||| ||| |||||||||||||| |||||||  || || ||||| || ||     | ||||||   | | ||| ||||||||| |    
T  7138080 aggttgagttctttaagcattggaaaacaatcggcaataagtaacagatcgttgttgtagagaaacgtgttggaacaatcgagagatgccaaagttgtaa 7138179  T
Q  171 tgttttgggagaaagcttgcaacccat 197  Q
    ||||||||||||||||| |||||||||    
T  7138180 tgttttgggagaaagctcgcaacccat 7138206  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 19633116 - 19633166
Alignment:
Q  158 gtcaaagttgttatgttttgggagaaagcttgcaacccatctgtgggaaag 208  Q
    ||||||||||| ||| ||| |||||||||| ||||||||| ||||||||||    
T  19633116 gtcaaagttgtaatgctttcggagaaagctcgcaacccatttgtgggaaag 19633166  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 6403502 - 6403547
Alignment:
Q  69 cgaggttgagttctttgagcaatgggaaacaatcggcaatgagtaa 114  Q
    |||||||||||| |||||||   |||||||||||||||||||||||    
T  6403502 cgaggttgagttgtttgagcttagggaaacaatcggcaatgagtaa 6403547  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 7135157 - 7135202
Alignment:
Q  71 aggttgagttctttgagcaatgggaaacaatcggcaatgagtaaca 116  Q
    ||||||||||||||| ||| ||| |||||||||||||| |||||||    
T  7135157 aggttgagttctttgtgcattggaaaacaatcggcaataagtaaca 7135202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 7135246 - 7135283
Alignment:
Q  160 caaagttgttatgttttgggagaaagcttgcaacccat 197  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  7135246 caaagttgtaatgttttgggagaaagctcgcaacccat 7135283  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 313
Target Start/End: Original strand, 6423989 - 6424025
Alignment:
Q  277 gagcgatgtgagtttcttcaacgggaaactagagatt 313  Q
    |||||| |||||||||||||| |||||||||||||||    
T  6423989 gagcgacgtgagtttcttcaatgggaaactagagatt 6424025  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 14809717 - 14809765
Alignment:
Q  160 caaagttgttatgttttgggagaaagcttgcaacccatctgtgggaaag 208  Q
    ||||||||| ||||||||||||||| |||||||||| | || |||||||    
T  14809717 caaagttgtaatgttttgggagaaatcttgcaacccttttgcgggaaag 14809765  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 17205662 - 17205710
Alignment:
Q  74 ttgagttctttgagcaatgggaaacaatcggcaatgagtaacaagtcat 122  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  17205662 ttgagttctttgagcaaagggaaacaatcggcaatgagtaacaggtcat 17205710  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 30827723 - 30827771
Alignment:
Q  70 gaggttgagttctttgagcaatgggaaacaatcggcaatgagtaacaag 118  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  30827723 gaggttgagttgtttgagcaaagggaaacaatcggcaatgagtaacaag 30827771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 7555124 - 7555176
Alignment:
Q  71 aggttgagttctttgagcaatgggaaacaatcggcaatgagtaacaagtcatt 123  Q
    ||||||||||||| |||||| |||||||| || ||||||||||||||||||||    
T  7555124 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcatt 7555176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 112
Target Start/End: Original strand, 33161122 - 33161165
Alignment:
Q  69 cgaggttgagttctttgagcaatgggaaacaatcggcaatgagt 112  Q
    |||||||||||| ||||||||| |||||||||||||||| ||||    
T  33161122 cgaggttgagttttttgagcaaagggaaacaatcggcaacgagt 33161165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 10634004 - 10633967
Alignment:
Q  76 gagttctttgagcaatgggaaacaatcggcaatgagta 113  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  10634004 gagttctttgagcaaagggaaacaatcggcaatgagta 10633967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 553775 - 553823
Alignment:
Q  158 gtcaaagttgttatgttttgggagaaagcttgcaacccatctgtgggaa 206  Q
    ||||||||||| |||||||||||||||||| ||||||||| || |||||    
T  553775 gtcaaagttgtaatgttttgggagaaagctcgcaacccatttgcgggaa 553823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 32151900 - 32151943
Alignment:
Q  77 agttctttgagcaatgggaaacaatcggcaatgagtaacaagtc 120  Q
    ||||||| |||||| |||||||||||||||||||| ||||||||    
T  32151900 agttcttcgagcaaagggaaacaatcggcaatgaggaacaagtc 32151943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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