View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_1D_low_11 (Length: 316)
Name: NF0254_1D_low_11
Description: NF0254_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_1D_low_11 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 24491646 - 24491863
Alignment:
| Q |
1 |
ttttaaattaagagatactagtattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24491646 |
ttttaaattaagagatactagtattattaagcatttaagatgagagttaatctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaa |
24491745 |
T |
|
| Q |
101 |
ccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttac |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24491746 |
ccatagctgtaggaagcaattattaggacaacaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttac |
24491845 |
T |
|
| Q |
201 |
atatcattattccttata |
218 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
24491846 |
atatcattattccttata |
24491863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 24495204 - 24495421
Alignment:
| Q |
1 |
ttttaaattaagagatactagtattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24495204 |
ttttaaattaagagatactagtattattaagcatttaagatgagagttaatctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaa |
24495303 |
T |
|
| Q |
101 |
ccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttac |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24495304 |
ccatagctgtaggaagcaattattaggacaacaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttac |
24495403 |
T |
|
| Q |
201 |
atatcattattccttata |
218 |
Q |
| |
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|||||||||||||||||| |
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| T |
24495404 |
atatcattattccttata |
24495421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 25 - 170
Target Start/End: Original strand, 2810226 - 2810371
Alignment:
| Q |
25 |
tattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattatt |
124 |
Q |
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|||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2810226 |
tattaagcattttagacgagagttattctgtgattaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctctaggaagcaattatt |
2810325 |
T |
|
| Q |
125 |
aggacagcaaatatgtttctatatattgtgccaatataccttgtga |
170 |
Q |
| |
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|||||| |||||||||||||||||||||| |||||||||||||||| |
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|
| T |
2810326 |
aggacaacaaatatgtttctatatattgtaccaatataccttgtga |
2810371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 24358959 - 24359176
Alignment:
| Q |
1 |
ttttaaattaagagatactagtattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24358959 |
ttttaaattaagagatactagtattattaagcatttaagatgagagttaatctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaa |
24359058 |
T |
|
| Q |
101 |
ccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24359059 |
ccatagctgtaggaagcaattattaggacaacaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttac |
24359158 |
T |
|
| Q |
201 |
atatcattattccttata |
218 |
Q |
| |
|
|||||||||||||||||| |
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| T |
24359159 |
atatcattattccttata |
24359176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 25 - 219
Target Start/End: Original strand, 86729 - 86922
Alignment:
| Q |
25 |
tattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattatt |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
86729 |
tattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattatt |
86828 |
T |
|
| Q |
125 |
aggacagcaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttatac |
219 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
86829 |
aggacagcaaatatgtttctatatattgtgccaaaataccttgtgaatgatatagc-aaaaatcattattccttatatatcattattccttatac |
86922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 18556788 - 18556573
Alignment:
| Q |
1 |
ttttaaattaagagatactagtattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaa |
100 |
Q |
| |
|
||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
18556788 |
ttttaaattaagagatattc-tagtattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactataattgactagagaaagtcaaa |
18556690 |
T |
|
| Q |
101 |
ccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttac |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
18556689 |
ccatagctggaggaagcaattattaggacagcaaatatgtttctatatattgtaccaatataccttgtgaatgatatagca-aaaatcattattccatac |
18556591 |
T |
|
| Q |
201 |
atatcattattccttata |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
18556590 |
atatcattattccttata |
18556573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 219 - 295
Target Start/End: Original strand, 22684888 - 22684964
Alignment:
| Q |
219 |
cttacagttgtccaaattgctatctgtgatgcatataactttttgggcatgtttaaggtaaactgggattcagtttt |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
22684888 |
cttacagttgtccaaattgctatctgtgatgcatataactctttgggcatgtttaaggtaaactgggattcaatttt |
22684964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 219 - 295
Target Start/End: Original strand, 22697011 - 22697087
Alignment:
| Q |
219 |
cttacagttgtccaaattgctatctgtgatgcatataactttttgggcatgtttaaggtaaactgggattcagtttt |
295 |
Q |
| |
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||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22697011 |
cttacagttgtccaagttgctatctttgatgcatataactctttgggcatgtttaaggtaaactgggattcagtttt |
22697087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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