View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_1D_low_12 (Length: 312)
Name: NF0254_1D_low_12
Description: NF0254_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_1D_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 5166731 - 5167034
Alignment:
| Q |
1 |
gtccttgaagataacccactagcagagaaatcccttgttgctagggaatccggtgactgtggtgcctcttcaaatttgtgttgctctccagaacaagcgc |
100 |
Q |
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| T |
5166731 |
gtccttgaagataacccactagcagagaaatcccttgttgctagggaatccggtgactgtggtgcctcttcaaatttgtgttgctctccagaacaagcgc |
5166830 |
T |
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| Q |
101 |
acaacatcttccacagcaatcaaattgtaaaatggggaaaaactatgaatcttttccttttgaaattgaagctaatagaaatcactcctcaataccaacc |
200 |
Q |
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| T |
5166831 |
acaacatcttccacagcaatcaaattgtaaaatggggaaaaactatgaatcttttccttttgaaattgaagctaatagaaatcactcctcaataccaacc |
5166930 |
T |
|
| Q |
201 |
ttcacaatgagcacaacaaaatcaatgctcaagcatcaatccatatcaattatcactacaatttgtaaacttaatcacaacaaataaaataaatataatg |
300 |
Q |
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||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5166931 |
ttcacaatgagcacaacaaaatcaatgttcaaacatcaatccatatcaattatcactacaatttgtaaacttaatcacaacaaataaaataaatataatg |
5167030 |
T |
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| Q |
301 |
tact |
304 |
Q |
| |
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|||| |
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| T |
5167031 |
tact |
5167034 |
T |
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