View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0254_1D_low_13 (Length: 308)

Name: NF0254_1D_low_13
Description: NF0254_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0254_1D_low_13
NF0254_1D_low_13
[»] chr4 (1 HSPs)
chr4 (16-308)||(52724329-52724621)
[»] chr5 (2 HSPs)
chr5 (19-193)||(17333818-17333992)
chr5 (19-65)||(24124585-24124631)
[»] chr2 (1 HSPs)
chr2 (24-132)||(31093192-31093299)
[»] chr6 (1 HSPs)
chr6 (24-171)||(10342765-10342912)
[»] scaffold0008 (1 HSPs)
scaffold0008 (79-131)||(41752-41804)


Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 308
Target Start/End: Complemental strand, 52724621 - 52724329
Alignment:
Q  16 tggacatcagtctcctgcactccacacccaccaacacacaattgttgatcaatagatataatcccccgacgaaataaattagcctttgtaggcaacctat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52724621 tggacatcagtctcctgcactccacacccaccaacacacaattgttgatcaatagatataatcccccgacgaaataaattagcctttgtaggcaacctat 52724522  T
Q  116 tccgaaacagccgccacgggaagattgataccttaagcgggatgtccttcctccacagaatgtcgtccgggatccaagtcacatcatggttgagtagcgc 215  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52724521 tccgaaacagccgccacaggaagattgataccttaagcgggatgtccttcctccacagaatgtcgtccgggatccaagtcacatcatggttgagtagcgc 52724422  T
Q  216 accatcagtaagagtacggtatgcccctctaactgtataacctgtcgaagggtcagggatccacgtccaaacatcattaatattctcctgcaa 308  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  52724421 accatcagtaagagtacggtacgcccctctaactgtataacctgtagaagggtcagggatccacgtccaaacatcattaatattctcctgcaa 52724329  T

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Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 17333818 - 17333992
Alignment:
Q  19 acatcagtctcctgcactccacacccaccaacacacaattgttgatcaatagatataatcccccgacgaaataaattagcctttgtaggcaacctattcc 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||  |||||||||| ||| |||||||||||||| | ||||||||||||||    
T  17333818 acatcagtctcctgcactccacacccaccaacacacatttgttgatcaacaggaataatcccccaacggaataaattagccttagcaggcaacctattcc 17333917  T
Q  119 gaaacagccgccacgggaagattgataccttaagcgggatgtccttcctccacagaatgtcgtccgggatccaag 193  Q
     ||| |||||||||  ||| ||  | ||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  17333918 aaaagagccgccacatgaaaatcaagaccttaagcgggatgtccttcctccacagaatgtcatccaggatccaag 17333992  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 24124631 - 24124585
Alignment:
Q  19 acatcagtctcctgcactccacacccaccaacacacaattgttgatc 65  Q
    |||| |||||||||||||||||||||||||||||||| ||| |||||    
T  24124631 acattagtctcctgcactccacacccaccaacacacatttgatgatc 24124585  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 31093192 - 31093299
Alignment:
Q  24 agtctcctgcactccacacccaccaacacacaattgttgatcaa-tagatataatcccccgacgaaataaattagcctttgtaggcaacctattccgaaa 122  Q
    ||||||||||| |||||||||||| ||||||||||| |  |||| | || ||||||| | ||||||||||||||||||| |||||||| |||||||||||    
T  31093192 agtctcctgcattccacacccaccgacacacaattgatcctcaaattga-ataatccac-gacgaaataaattagccttagtaggcaatctattccgaaa 31093289  T
Q  123 cagccgccac 132  Q
     |||||||||    
T  31093290 aagccgccac 31093299  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 171
Target Start/End: Original strand, 10342765 - 10342912
Alignment:
Q  24 agtctcctgcactccacacccaccaacacacaattgttgatca-atagatataatcccccgacgaaataaattagcctttgtaggcaacctattccgaaa 122  Q
    |||||||||||| ||||||||||| ||||||| ||| |  ||| || || || |||||||||||||||||||||||||| ||||| |  ||||| |||||    
T  10342765 agtctcctgcacaccacacccacctacacacatttgatcctcatattga-attatcccccgacgaaataaattagccttagtaggaagtctatttcgaaa 10342863  T
Q  123 cagccgccacgggaagattgataccttaagcgggatgtccttcctccac 171  Q
     |||| ||| |  || ||  | ||||||||||| | |||||||||||||    
T  10342864 gagccaccaagcaaaaatcaagaccttaagcggaacgtccttcctccac 10342912  T

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Target: scaffold0008 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 41804 - 41752
Alignment:
Q  79 ccccgacgaaataaattagcctttgtaggcaacctattccgaaacagccgcca 131  Q
    |||||||| ||||||||  |||| ||||||||||||||| |||| ||||||||    
T  41804 ccccgacggaataaatttaccttcgtaggcaacctattctgaaagagccgcca 41752  T

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