View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_1D_low_2 (Length: 560)
Name: NF0254_1D_low_2
Description: NF0254_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_1D_low_2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 166 - 560
Target Start/End: Original strand, 13227268 - 13227663
Alignment:
| Q |
166 |
taatggtctagattgttagtactaaccttttttaaaaattctaccacattatgttatccaatttttgtgcactatgtctaagaaatggagattttcaatg |
265 |
Q |
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| T |
13227268 |
taatggtctagattgtttggactaacctttttcaaaaattctaccacattatgttatccaatttttgtgcactatgtctaagagatgaagattttcaatg |
13227367 |
T |
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| Q |
266 |
ttgtgacaaaattcggtgcatgggtaggtgtactattgcgcatgggtctttattttcactttcacaagttgcnnnnnnnn-gtccatcatcttcaaatat |
364 |
Q |
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| T |
13227368 |
ttgtgacaaaattcggtgcatgggtaggtgtactattgcgcatgggtctttattttcactttcacaagttgctttttttttgtccatcatcttcaaatat |
13227467 |
T |
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| Q |
365 |
tttatgatggcccacttaaaatattgtcaattatcacaactactttgaatcatgatgatggtgactttgaatttttgataatcctttaaagtaaaacgag |
464 |
Q |
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| T |
13227468 |
tttatgatggcccacttaaaatattgtcaattatcacaactactttgaatcatgatgatggtgactttgaatttttgataatcctttaaagtaaaacgag |
13227567 |
T |
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| Q |
465 |
tggaatgagttaaagctagtgtagtgtgtgtttggtcttattatggaactattaattacttaatcgtacatgataataataaaagggtgttgtttg |
560 |
Q |
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| T |
13227568 |
tggaatgagttaaagctagtgtagtgtgtgtttggtcttattatggaactattaattacttaatcgtacatgataataataaaagggtgttgtttg |
13227663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 13227075 - 13227245
Alignment:
| Q |
13 |
tatattgatatgttaaggtgtggtgaaatgtggttgatttaggattaggagtgtttgacttgaagacataatcaatagttcttagttgttgttttatgat |
112 |
Q |
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| T |
13227075 |
tatattgatatgttaaggtgtggtgaaatgtggttgattttggattaggagtgtttgacttgaagacataatcaatagatcttagttgttgttttatgat |
13227174 |
T |
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| Q |
113 |
atggttgcaaagtcattaaaacttt-gatgttatggtctagattgtttttgaagtaatggtctagattgtt |
182 |
Q |
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| T |
13227175 |
atggttgcaaagacattaaaactttggatgttatggtctagattgtttttgaagtaatggtctagattgtt |
13227245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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