View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_1D_low_20 (Length: 271)
Name: NF0254_1D_low_20
Description: NF0254_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_1D_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 32183531 - 32183290
Alignment:
| Q |
15 |
caactgtctcggtagaaagagttaaagtaagcaaatctggggaccgtaaagagctttcattcaatatagatagaaatgaagaagtgagtgatgttttcga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32183531 |
caactgtctcggtagaaagagttaaagtaagcaaatctggggaccgtaaagagctttcattcaatatagatagaaatgaagaagtgagtgatgttttcga |
32183432 |
T |
|
| Q |
115 |
aggtattagtgtaaagtggaaactaatttgcatagaagtggactcttcgcggattcgaagttacgatgatgactcctcggctgtgtcagaaataagatcc |
214 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32183431 |
aggtattagtgtaaagtggaaactaatttgcatagaagtggactcttcgcggattcgaagttacgatgatgactcctcggctgtgtcagaaataagatcc |
32183332 |
T |
|
| Q |
215 |
tatgagctgactttccacaagaaacacaaagacaggatcatt |
256 |
Q |
| |
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|||||||||||||| |||||||| |||||||||| ||||||| |
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| T |
32183331 |
tatgagctgacttttcacaagaagcacaaagacaagatcatt |
32183290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 32119867 - 32119639
Alignment:
| Q |
15 |
caactgtctcggtagaaagagttaaagtaagcaaatctggggaccgtaaagagctttcattcaatatagatagaaatgaagaagtgagtgatgttttcga |
114 |
Q |
| |
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|||||||||| |||||||||||||||| | ||||||||| || | |||| ||||| ||||||||| ||||||||||||||||||||||||||||| || |
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| T |
32119867 |
caactgtctcagtagaaagagttaaagcaggcaaatctgaagatcataaaaagcttgaattcaatattgatagaaatgaagaagtgagtgatgtttttga |
32119768 |
T |
|
| Q |
115 |
aggtattagtgtaaagtggaaactaatttgcatagaagtggactcttcgcggattcgaagttacgatgatgactcctcggctgtgtcagaaataagatcc |
214 |
Q |
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|||||||||||||||||||||||||||||||||| | || ||| |||||||||||||||||| |||||||||||| || |||||||||||||||||| |
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| T |
32119767 |
aggtattagtgtaaagtggaaactaatttgcatacaggtagacaagtcgcggattcgaagttacagtgatgactcctcagccgtgtcagaaataagatcc |
32119668 |
T |
|
| Q |
215 |
tatgagctgactttccacaagaaacacaa |
243 |
Q |
| |
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|||||||| ||||| |||||||||||||| |
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| T |
32119667 |
tatgagctaacttttcacaagaaacacaa |
32119639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 32175510 - 32175272
Alignment:
| Q |
15 |
caactgtctcggtagaaagagttaaagtaagcaaatctggggaccgtaaagagctttcattcaatatagatagaaatgaagaagtgagtgatgttttcga |
114 |
Q |
| |
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|||||||| | | |||||||||||| ||| ||||||||| ||| | ||||||| || |||||||||| ||||||||||||||||||||||||||||| | |
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| T |
32175510 |
caactgtcgcagcagaaagagttaaggtaggcaaatctgaggatcataaagagattgcattcaatattgatagaaatgaagaagtgagtgatgtttttgg |
32175411 |
T |
|
| Q |
115 |
aggtattagtgtaaagtggaaactaatttgcatagaagtggactcttcgcggattcgaagttacgatgatgactcctcggctgtgtcagaaataagatcc |
214 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| ||| || | ||||||| ||||||| |
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| T |
32175410 |
aggtgttagtgtaaagtggaaactaatttgcatacaagtggactcttcgcggattcgaagttatgataatga---ctcagccgagtcagaattaagatca |
32175314 |
T |
|
| Q |
215 |
tatgagctgactttccacaagaaacacaaagacaggatcatt |
256 |
Q |
| |
|
|||||||| | ||| ||||| ||||||||| ||| ||||||| |
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|
| T |
32175313 |
tatgagctaagttttcacaataaacacaaaaacaagatcatt |
32175272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 32159230 - 32159002
Alignment:
| Q |
15 |
caactgtctcggtagaaagagttaaagtaagcaaatctggggaccgtaaagagctttcattcaatatagatagaaatgaagaagtgagtgatgttttcga |
114 |
Q |
| |
|
|||||||||| | ||| |||||||| ||||||||||||| ||| | |||||||||| |||||||||| ||||||||||||||||||||||||||||| || |
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| T |
32159230 |
caactgtctcagcagacagagttaaggtaagcaaatctgaggatcataaagagcttgcattcaatattgatagaaatgaagaagtgagtgatgtttttga |
32159131 |
T |
|
| Q |
115 |
aggtattagtgtaaagtggaaactaatttgcatagaagtggactcttcgcggattcgaagttacgatgatgactcctcggctgtgtcagaaataagatcc |
214 |
Q |
| |
|
|||| |||||||||||||||||||||| || ||| |||| ||||| || | ||| || ||||||| |||||||||| | |||||||||||||||||| |
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| T |
32159130 |
aggtgttagtgtaaagtggaaactaatatgtatacaagtcgactcatcaagaattagacattacgataatgactcctcacccgtgtcagaaataagatcc |
32159031 |
T |
|
| Q |
215 |
tatgagctgactttccacaagaaacacaa |
243 |
Q |
| |
|
|||||||| ||||| |||||||| ||||| |
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|
| T |
32159030 |
tatgagctaacttttcacaagaagcacaa |
32159002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 32111824 - 32111583
Alignment:
| Q |
15 |
caactgtctcggtagaaagagttaaagtaagcaaatctggggaccgtaaagagctttcattcaatatagatagaaatgaagaagtgagtgatgttttcga |
114 |
Q |
| |
|
|||||||||| | |||||||||||||| || ||||||| ||| | |||| |||| ||||||||| |||||||| |||||||||||||||||||||| || |
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|
| T |
32111824 |
caactgtctcagcagaaagagttaaagcaaccaaatctatggaacataaaaagctctcattcaatctagatagagatgaagaagtgagtgatgtttttga |
32111725 |
T |
|
| Q |
115 |
aggtattagtgtaaagtggaaactaatttgcatagaagtggactcttcgcggattcgaagttacgatgatgactcctcggctgtgtcagaaataagatcc |
214 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||| |||| ||||| || | ||||| || ||| | ||||||| ||||||||||||||||||| |
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| T |
32111724 |
aggtgttagtgtaaagtggaaactaatatgcatacaagtcgactcatcaagagttcgacattttgataggggctcctcgcctgtgtcagaaataagatca |
32111625 |
T |
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| Q |
215 |
tatgagctgactttccacaagaaacacaaagacaggatcatt |
256 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| ||| ||||||| |
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| T |
32111624 |
tatgagctaacttttcacaagaaacacaaaaacaagatcatt |
32111583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 148
Target Start/End: Original strand, 32205342 - 32205462
Alignment:
| Q |
28 |
agaaagagttaaagtaagcaaatctggggaccgtaaagagctttcattcaatatagatagaaatgaagaagtgagtgatgttttcgaaggtattagtgta |
127 |
Q |
| |
|
||||||||||||||||||||||||| || | |||| |||||||||||||||| |||||| ||||||||||||||||| ||| ||||||||||| ||| |
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| T |
32205342 |
agaaagagttaaagtaagcaaatctcatgatcataaaaagctttcattcaatattgatagaggtgaagaagtgagtgatgattttgaaggtattagagta |
32205441 |
T |
|
| Q |
128 |
aagtggaaactaatttgcata |
148 |
Q |
| |
|
||||||||| |||| |||||| |
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|
| T |
32205442 |
aagtggaaattaatatgcata |
32205462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 159
Target Start/End: Complemental strand, 32178623 - 32178495
Alignment:
| Q |
32 |
agagttaaagtaagcaaatctggggaccgtaaagagctttcattcaatatagatagaaatgaagaagtgagtgatg-ttttcgaaggtattagtgtaaag |
130 |
Q |
| |
|
|||||||| ||| ||||||||| ||| | ||||||| | |||||||||| ||||||||||||||||||||||||| |||| |||||| ||||||||||| |
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|
| T |
32178623 |
agagttaaggtacgcaaatctgaggatcataaagagagtgcattcaatattgatagaaatgaagaagtgagtgatgttttttgaaggtgttagtgtaaag |
32178524 |
T |
|
| Q |
131 |
tggaaactaatttgcatagaagtggactc |
159 |
Q |
| |
|
||||||||||| || ||| |||| ||||| |
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|
| T |
32178523 |
tggaaactaatatgtatacaagtcgactc |
32178495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 32211103 - 32211183
Alignment:
| Q |
68 |
ctttcattcaatatagatagaaatgaagaagtgagtgatgttttcgaaggtattagtgtaaagtggaaactaatttgcata |
148 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||| ||| |||||||||| |||||||||||| |||| |||||| |
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|
| T |
32211103 |
ctttcattcaatattgatagaggtgaagaagtgagtgatgattttgaaggtattacagtaaagtggaaattaatatgcata |
32211183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 32211232 - 32211278
Alignment:
| Q |
197 |
gtgtcagaaataagatcctatgagctgactttccacaagaaacacaa |
243 |
Q |
| |
|
||||||||||| ||||||||||| || ||||| |||||||||||||| |
|
|
| T |
32211232 |
gtgtcagaaattagatcctatgaactaacttttcacaagaaacacaa |
32211278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 32205512 - 32205557
Alignment:
| Q |
198 |
tgtcagaaataagatcctatgagctgactttccacaagaaacacaa |
243 |
Q |
| |
|
|||||||||| ||||||||||| || ||||| |||||||||||||| |
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|
| T |
32205512 |
tgtcagaaattagatcctatgaactaacttttcacaagaaacacaa |
32205557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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