View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0254_1D_low_21 (Length: 269)

Name: NF0254_1D_low_21

Description: NF0254_1D

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF0254_1D_low_21

[»] chr4 (1 HSPs)

Alignment Details

Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 141; E-Value: 5e-74

Query Start/End: Original strand, 22 - 190

Target Start/End: Original strand, 39149162 - 39149329

Alignment:

Q	22	gatggttattctatcaaagagatttatcatattcttacgtctacttatcttcttaataccgacacacatatttgatttgaaataaagttataccctacag	121	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	39149162	gatggttattctatcaaaaagatttatcatattcttacatctacttatcttcttaataccgacacacatatttgatttgaaataaagttata-cctacag	39149260	T

Q	122	ataagaccaataacatctaagttctaatctcaatcacaatcagaattacccattttatatgacctcaag	190	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	39149261	ataagaccaataacatctaagttttaatctcaatcacaatcacaattacccattttgtatgacctcaag	39149329	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

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