View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_1D_low_23 (Length: 264)
Name: NF0254_1D_low_23
Description: NF0254_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_1D_low_23 |
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| [»] scaffold0003 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0131 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 134711 - 134879
Alignment:
| Q |
20 |
aaaaccttattaatcttttcttgttttacgctgttgttgtgagtatttttaaagtaatgttatccagtaacccattgtttcattaaaatctgtaaccctg |
119 |
Q |
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| T |
134711 |
aaaaccttattaatcttttcttgttttacgctgttgttgtgagtatttttaaagtaatgttatccagtaacccattgtttcattaaaatctgtaaccctg |
134810 |
T |
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| Q |
120 |
ttttgaaattttgagtgaaatgttaaaatgggattttactacttttttgagtgaaatgttgaaatttga |
188 |
Q |
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| T |
134811 |
ttttgaaattttgagtgaaatattaaaatgagattttactacttttttgagtgaaatgttgaaatttga |
134879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 111527 - 111694
Alignment:
| Q |
20 |
aaaaccttattaatcttttcttgttttacgctgttgttgtgagtatttttaaagtaatgttatccagtaacccattgtttcattaaaatctgtaaccctg |
119 |
Q |
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| T |
111527 |
aaaaccttattaatcttttcttgttttacgctgttgttatgagtatttttaaagtaatgttatccagtaacccattgtttcattaaaatctgtaaccctg |
111626 |
T |
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| Q |
120 |
ttttgaaattttgagtgaaatgttaaaatgggattttactacttttttgagtgaaatgttgaaatttga |
188 |
Q |
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| T |
111627 |
ttttgaaattttgagtgaaatgttaaaatgggattttactacttttttgagtg-aatgttgaaatttga |
111694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 43099659 - 43099745
Alignment:
| Q |
178 |
ttgaaatttgaaagaaatcaaagttcctatcaaaatatttacatttgatgtatattatagcattttttaatagcattagactaaaga |
264 |
Q |
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| T |
43099659 |
ttgaaatttgaaagaaatctaagttcctatcaaaatatttacatttgatgtatattatagcattttttaatagcattagactaaaga |
43099745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 11622 - 11656
Alignment:
| Q |
151 |
gattttactacttttttgagtgaaatgttgaaatt |
185 |
Q |
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| T |
11622 |
gattttactacttttttgagtgaaatgttgaaatt |
11656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 11562 - 11607
Alignment:
| Q |
41 |
tgttttacgctgttgttgtgagta-tttttaaagtaatgttatcca |
85 |
Q |
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| T |
11562 |
tgttttacgctgttgttgtgaatattttttgaagtaatgttatcca |
11607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 2849472 - 2849434
Alignment:
| Q |
192 |
aaatcaaagttcctatcaaaatatttacatttgatgtat |
230 |
Q |
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| T |
2849472 |
aaatccaagttcctatcaaaatattaacatttgatgtat |
2849434 |
T |
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