View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0254_1D_low_24 (Length: 263)
Name: NF0254_1D_low_24
Description: NF0254_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_1D_low_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 95 - 182
Target Start/End: Original strand, 32693576 - 32693663
Alignment:
| Q |
95 |
agaacaagtttgaagacccataccatgactttgaccattacaccattcaccagaaaaagaatcaccagtatagaacctataaacacca |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32693576 |
agaacaagtttgaagacccataccatgactttgaccattacaccattcaccagaaaaagaatcaccagtatagaacctataaacacca |
32693663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 182
Target Start/End: Original strand, 24238842 - 24238929
Alignment:
| Q |
95 |
agaacaagtttgaagacccataccatgactttgaccattacaccattcaccagaaaaagaatcaccagtatagaacctataaacacca |
182 |
Q |
| |
|
|||||||| ||||| ||| | ||||||||| || |||||| ||||||| |||||| || ||||||||||||| || |||||||||||| |
|
|
| T |
24238842 |
agaacaagattgaacaccaaaaccatgactctgtccattaaaccattccccagaataacaatcaccagtataaaatctataaacacca |
24238929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 17303611 - 17303679
Alignment:
| Q |
117 |
ccatgactttgaccattacaccattcaccagaaaaagaatcaccagtatagaacctataaacaccaaac |
185 |
Q |
| |
|
|||||||| || |||||| ||||||| |||| | || ||| |||||||| |||||||||||||||||| |
|
|
| T |
17303611 |
ccatgactctgtccattagaccattctccagtataaacatccccagtataaaacctataaacaccaaac |
17303679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 995 times since January 2019
Visitors: 2571