View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_1D_low_25 (Length: 263)
Name: NF0254_1D_low_25
Description: NF0254_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_1D_low_25 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 31388325 - 31388587
Alignment:
| Q |
1 |
tacactgataaatggactttaagagtacctgctagaaatccacaataatgtactgtactactttttgaaaataatttcagcataagtttagactttaaga |
100 |
Q |
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| T |
31388325 |
tacactgataaatggactttaagagtacctgctagaaatccacaataatgtactgtactactttttgaaaataatttcagcataagtttagactttaaga |
31388424 |
T |
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| Q |
101 |
gctactctattcagatgttcacactagtctatccttctgattattataaaccttacaaactttcatataaaaacctttattcaatccttaaatgacaact |
200 |
Q |
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| T |
31388425 |
gctactctattcagatgttcacactagtctatccttctgattattataaaccttacaaactttcatataaaaacctttattcaatccttaaatgacaact |
31388524 |
T |
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| Q |
201 |
gtccaagttttgtttgcaatagaaagacaacatatcttgtcaacaacagattatgacttttga |
263 |
Q |
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| T |
31388525 |
gtccaagttttgtttgcaatagaaagacaacatatcttgtcaacaacagattgtgacttttga |
31388587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 31460928 - 31461185
Alignment:
| Q |
1 |
tacactgataaatggactttaagagtacctgctagaaatccacaataatgtactgtactactttttgaaaataatttcagcataagtttagactttaaga |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||| |
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| T |
31460928 |
tacactgacaaatggactttaagagtacctgctagaaatccacaataatgtactgtactacttttcgaaaata-tttcagcatgagtttagactttaaga |
31461026 |
T |
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| Q |
101 |
gctactctattcagatgttcacactagtctatccttctgattattataaaccttacaaactttcatataaaaacctttattcaatccttaaatgacaact |
200 |
Q |
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| T |
31461027 |
gctactctattcagatgttcacactcgtctatccttctgattattataatccttacaaactttcatataaaaacctttattaaatcctgcaatcacaact |
31461126 |
T |
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| Q |
201 |
gtccaagttttgtttgcaatagaaagacaacatatcttgtcaacaacagattatgactt |
259 |
Q |
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| T |
31461127 |
gtccaagttttgtttgcaatagaaagacaacatatactgtcaacaacagattgtgactt |
31461185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 40843854 - 40844086
Alignment:
| Q |
18 |
tttaagagtacctgctagaaatccacaataatgtactgtactactttttgaaaataatttcagcataagtttagactttaagagctactctattcagatg |
117 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||| |||| | || ||| ||||||||| | ||| |||||| ||| |||||||||||| ||| |
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| T |
40843854 |
tttaagagtacctgctagaaatccacaatatt-tactgtactgctttgtaaagata-tttcagcatgatttttgacttttagaactactctattcaaatg |
40843951 |
T |
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| Q |
118 |
ttcacactagtctatccttctgattattataaaccttacaaactttcatataaaaacctttattcaatccttaaatgacaactgtccaagttttgtttgc |
217 |
Q |
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| T |
40843952 |
ttcacactagtctttctttctgattattataaaccttgcaaactttcatataaaaacctttattcaatccttcaatgacaactgtccaagtcttatttgc |
40844051 |
T |
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| Q |
218 |
aatagaaagacaacatatcttgtcaacaacagatt |
252 |
Q |
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| T |
40844052 |
aatagaaagacaacatatcttgtcaacaacagatt |
40844086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 31495360 - 31495417
Alignment:
| Q |
74 |
atttcagcataagtttagactttaagagctactctattcagatgttcacactagtcta |
131 |
Q |
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| T |
31495360 |
atttcagcataacttttgactttaagagcttctctattcacatgttcacactagtcta |
31495417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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