View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0254_1D_low_25 (Length: 263)
Name: NF0254_1D_low_25
Description: NF0254_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0254_1D_low_25
[» ] chr5 (4 HSPs)
Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 31388325 - 31388587
Alignment:
Q
1
tacactgataaatggactttaagagtacctgctagaaatccacaataatgtactgtactactttttgaaaataatttcagcataagtttagactttaaga
100
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
31388325
tacactgataaatggactttaagagtacctgctagaaatccacaataatgtactgtactactttttgaaaataatttcagcataagtttagactttaaga
31388424
T
Q
101
gctactctattcagatgttcacactagtctatccttctgattattataaaccttacaaactttcatataaaaacctttattcaatccttaaatgacaact
200
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
31388425
gctactctattcagatgttcacactagtctatccttctgattattataaaccttacaaactttcatataaaaacctttattcaatccttaaatgacaact
31388524
T
Q
201
gtccaagttttgtttgcaatagaaagacaacatatcttgtcaacaacagattatgacttttga
263
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
T
31388525
gtccaagttttgtttgcaatagaaagacaacatatcttgtcaacaacagattgtgacttttga
31388587
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 31460928 - 31461185
Alignment:
Q
1
tacactgataaatggactttaagagtacctgctagaaatccacaataatgtactgtactactttttgaaaataatttcagcataagtttagactttaaga
100
Q
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||
T
31460928
tacactgacaaatggactttaagagtacctgctagaaatccacaataatgtactgtactacttttcgaaaata-tttcagcatgagtttagactttaaga
31461026
T
Q
101
gctactctattcagatgttcacactagtctatccttctgattattataaaccttacaaactttcatataaaaacctttattcaatccttaaatgacaact
200
Q
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||| ||||||
T
31461027
gctactctattcagatgttcacactcgtctatccttctgattattataatccttacaaactttcatataaaaacctttattaaatcctgcaatcacaact
31461126
T
Q
201
gtccaagttttgtttgcaatagaaagacaacatatcttgtcaacaacagattatgactt
259
Q
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
T
31461127
gtccaagttttgtttgcaatagaaagacaacatatactgtcaacaacagattgtgactt
31461185
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 40843854 - 40844086
Alignment:
Q
18
tttaagagtacctgctagaaatccacaataatgtactgtactactttttgaaaataatttcagcataagtttagactttaagagctactctattcagatg
117
Q
|||||||||||||||||||||||||||||| | ||||||||| |||| | || ||| ||||||||| | ||| |||||| ||| |||||||||||| |||
T
40843854
tttaagagtacctgctagaaatccacaatatt-tactgtactgctttgtaaagata-tttcagcatgatttttgacttttagaactactctattcaaatg
40843951
T
Q
118
ttcacactagtctatccttctgattattataaaccttacaaactttcatataaaaacctttattcaatccttaaatgacaactgtccaagttttgtttgc
217
Q
||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||
T
40843952
ttcacactagtctttctttctgattattataaaccttgcaaactttcatataaaaacctttattcaatccttcaatgacaactgtccaagtcttatttgc
40844051
T
Q
218
aatagaaagacaacatatcttgtcaacaacagatt
252
Q
|||||||||||||||||||||||||||||||||||
T
40844052
aatagaaagacaacatatcttgtcaacaacagatt
40844086
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 31495360 - 31495417
Alignment:
Q
74
atttcagcataagtttagactttaagagctactctattcagatgttcacactagtcta
131
Q
|||||||||||| ||| ||||||||||||| ||||||||| |||||||||||||||||
T
31495360
atttcagcataacttttgactttaagagcttctctattcacatgttcacactagtcta
31495417
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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