View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0254_1D_low_36 (Length: 244)
Name: NF0254_1D_low_36
Description: NF0254_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_1D_low_36 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 23 - 244
Target Start/End: Original strand, 4378636 - 4378853
Alignment:
| Q |
23 |
atttatgtgatagtttaaagttaaaaccctaataatcatgcatggtaatccctccaataagaaacctacagaacagaaagcttttaacactgatgatcag |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4378636 |
atttatgtgatagtttaaagttaaaaccctaataatcatgcatggtaatccctccaataagaaacctacagaacagaaagcttttaacactgatgatc-- |
4378733 |
T |
|
| Q |
123 |
agagaggaagaggtcatcacacacagtgacttgacagaaaaaagaagaacaagttgaagttgaactacagtgtgtggtccatgaagaaaacttaagtgat |
222 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4378734 |
agagaggaagaggtca-cacacacagtgacttgacagaaaaaagaagaacaagttgaagttgaactacagtgtgtggtccatgaagaaaactt-agtgat |
4378831 |
T |
|
| Q |
223 |
tttagtctcatttttggtgcag |
244 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
4378832 |
tttagtctcatttttggtgcag |
4378853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 31714512 - 31714612
Alignment:
| Q |
23 |
atttatgtgatagtttaaagttaaaaccctaataatcatgcatggtaatccctccaataagaaacctacagaacagaaagcttttaacactgatgatcag |
122 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||| ||||| |
|
|
| T |
31714512 |
atttatgtgatagtttaaagttcaaaccataataatcatgcatggtaatccctccaataagaaacctacacaatagaaagc-tttaacactgatcatcag |
31714610 |
T |
|
| Q |
123 |
ag |
124 |
Q |
| |
|
|| |
|
|
| T |
31714611 |
ag |
31714612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 243
Target Start/End: Original strand, 31714671 - 31714718
Alignment:
| Q |
194 |
gtgtggtccatgaagaaaacttaagtgattttagtctcatttttggtgca |
243 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31714671 |
gtgtggtccatga-gaaaacttat-tgattttagtctcatttttggtgca |
31714718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1310 times since January 2019
Visitors: 2577