View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_1D_low_4 (Length: 428)
Name: NF0254_1D_low_4
Description: NF0254_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_1D_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 52722953 - 52722744
Alignment:
| Q |
1 |
ataagacttcaatcttagtacaactcgaagtttgaaactatta-taaatagggataaacacctcatgtatactcactcattctacatctcactaagccat |
99 |
Q |
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|||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
52722953 |
ataagatttcaatcttagtacaattcgaagtttgaaactattaataaatagggataaacatctcatgtatactcactcattctacatctcactaaaccat |
52722854 |
T |
|
| Q |
100 |
gtcacatcatatcttattttgatattaagatatctttgcgtgtatgaatggaagtaggtcagtcaagaaggtatataacctagcctccatcaggcctaga |
199 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| | |
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| T |
52722853 |
gtcacatcatatcttattttgatatcaagatatctttgcgtgtatgaatggaagtaggtcagtcaagaaggtatataacctagcctccgttgggcctaaa |
52722754 |
T |
|
| Q |
200 |
tcagactaat |
209 |
Q |
| |
|
|||||||||| |
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|
| T |
52722753 |
tcagactaat |
52722744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 257 - 406
Target Start/End: Complemental strand, 52722702 - 52722553
Alignment:
| Q |
257 |
gaatgtaatcactaatcactgtgtcaccatctctccccggcaagggcaatttcttagtcaccgcttatccatagcttgattctcaatttatgtgnnnnnn |
356 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52722702 |
gaatgtaatcactaatcactatgtcaccatctctccccgtcaagggcaatttcttagtcaccgcttatccatagcttgattctcaatttatgtgaaaaac |
52722603 |
T |
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| Q |
357 |
nnnnnngattgattgacacataaacacccacagaccaacaagagatgcgt |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52722602 |
aaaaaagattgattgacacataaacacccacagaccaacaagagatgcgt |
52722553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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