View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0254_1D_low_40 (Length: 232)

Name: NF0254_1D_low_40
Description: NF0254_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0254_1D_low_40
NF0254_1D_low_40
[»] chr4 (5 HSPs)
chr4 (8-226)||(23828617-23828835)
chr4 (8-228)||(23824689-23824907)
chr4 (30-222)||(23819387-23819581)
chr4 (131-222)||(23832587-23832678)
chr4 (32-81)||(23832484-23832533)
[»] chr2 (5 HSPs)
chr2 (157-215)||(41442287-41442345)
chr2 (157-222)||(41448723-41448788)
chr2 (157-215)||(41459069-41459127)
chr2 (30-81)||(41458935-41458986)
chr2 (30-72)||(41442163-41442205)
[»] chr5 (1 HSPs)
chr5 (157-225)||(34150303-34150371)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 23828617 - 23828835
Alignment:
Q  8 agatgaaaacagccttctgatttatgaatttatgccacgtggcagcttggagaatcacttgttcatcagtgagtgcttcccagttcatcttttctcagtt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  23828617 agatgaaaacagccttctgatttatgaatttatgccacgtggcagcttggagaatcacttgttcatcagtgagtgcttcccagttcatcttttctcactt 23828716  T
Q  108 gtacttgtactggagaaggcatgcctaataacattaccattaatgatgtaacaggaggctcatattttcaacctctttcttggagcctacgtttgaaggt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23828717 gtacttgtactggagaaggcatgcctaataacattaccattaatgatgtaacaggaggctcatattttcaacctctttcttggagcctacgtttgaaggt 23828816  T
Q  208 tgctcttggtgctgctaaa 226  Q
    |||||||||||||||||||    
T  23828817 tgctcttggtgctgctaaa 23828835  T

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Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 23824689 - 23824907
Alignment:
Q  8 agatgaaaacagccttctgatttatgaatttatgccacgtggcagcttggagaatcacttgttcatcagtgagtgcttcccagttcatcttttctcagtt 107  Q
    ||||||||| |||||| || | |||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||||||| |||| || ||    
T  23824689 agatgaaaatagccttttggtctatgaatttatgccacgtggcagcttggagaatcacttgttcatgagtaagttcttccaagttcatcatttcaca-tt 23824787  T
Q  108 gtacttgtactggagaaggcatgcctaataacattaccattaatgatgt---aac--aggaggctcatattttcaacctctttcttggagcctacgtttg 202  Q
    ||   ||| || ||||||||||||||||   |||||||| |||| ||||   |||  |||||||||||||||||||||||||||||||||||||||||||    
T  23824788 gt---tgttcttgagaaggcatgcctaa---cattaccaataataatgttgtaacgcaggaggctcatattttcaacctctttcttggagcctacgtttg 23824881  T
Q  203 aaggttgctcttggtgctgctaaatg 228  Q
    |||||||||||||||||||| |||||    
T  23824882 aaggttgctcttggtgctgccaaatg 23824907  T

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Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 30 - 222
Target Start/End: Original strand, 23819387 - 23819581
Alignment:
Q  30 tatgaatttatgccacgtggcagcttggagaatcacttgttcatcagtgagtgcttcccagttcatcttttctcagttgtact--tgtactggagaa-gg 126  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||  ||||  ||||||||  || ||||   | |  |||||| ||||| ||    
T  23819387 tatgaatttatgcctcgtggcaccttggagaatcacttgttcatcagtgagta-ttcctggttcatctactcacagtcacattgttgtacttgagaaagg 23819485  T
Q  127 catgcctaataacattaccattaatgatgtaacaggaggctcatattttcaacctctttcttggagcctacgtttgaaggttgctcttggtgctgc 222  Q
    |||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||    
T  23819486 catgcctaataatattaccaataataatgtaacaggaggctcatattttcaacctctttcttggagcctccggttgaaggttgctgttggtgctgc 23819581  T

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Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 23832587 - 23832678
Alignment:
Q  131 cctaataacattaccattaatgatgtaacaggaggctcatattttcaacctctttcttggagcctacgtttgaaggttgctcttggtgctgc 222  Q
    |||||||| |||| || | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23832587 cctaataatattatcaattatgatttaacaggaggctcatattttcaacctctttcttggagcctacgtttgaaggttgctcttggtgctgc 23832678  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 23832484 - 23832533
Alignment:
Q  32 tgaatttatgccacgtggcagcttggagaatcacttgttcatcagtgagt 81  Q
    |||||| ||||| ||||||| |||||||||||||||||||||||||||||    
T  23832484 tgaattcatgcctcgtggcaacttggagaatcacttgttcatcagtgagt 23832533  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 41442287 - 41442345
Alignment:
Q  157 aacaggaggctcatattttcaacctctttcttggagcctacgtttgaaggttgctcttg 215  Q
    ||||||||| |||||||||||||||||||| |||||||| ||| |||||||||||||||    
T  41442287 aacaggaggatcatattttcaacctctttcatggagccttcgtctgaaggttgctcttg 41442345  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 41448723 - 41448788
Alignment:
Q  157 aacaggaggctcatattttcaacctctttcttggagcctacgtttgaaggttgctcttggtgctgc 222  Q
    ||||| ||||||||||||||||||||| ||| |||||||  || ||||||||||||||||||||||    
T  41448723 aacagaaggctcatattttcaacctctctctcggagcctctgtctgaaggttgctcttggtgctgc 41448788  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 41459069 - 41459127
Alignment:
Q  157 aacaggaggctcatattttcaacctctttcttggagcctacgtttgaaggttgctcttg 215  Q
    ||||||||| |||||||| ||||||||||| |||||||| ||| |||||||||||||||    
T  41459069 aacaggaggatcatatttccaacctctttcatggagcctccgtctgaaggttgctcttg 41459127  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 41458935 - 41458986
Alignment:
Q  30 tatgaatttatgccacgtggcagcttggagaatcacttgttcatcagtgagt 81  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||  |||||||    
T  41458935 tatgagtttatgcctcgtggaagcttggagaatcacttgttcaggagtgagt 41458986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 41442163 - 41442205
Alignment:
Q  30 tatgaatttatgccacgtggcagcttggagaatcacttgttca 72  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||    
T  41442163 tatgagtttatgcctcgtggaagcttggagaatcacttgttca 41442205  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 34150303 - 34150371
Alignment:
Q  157 aacaggaggctcatattttcaacctctttcttggagcctacgtttgaaggttgctcttggtgctgctaa 225  Q
    ||||||||  || ||||||||||| |||||||||||| | ||  ||||||||||||||| |||||||||    
T  34150303 aacaggagcttcttattttcaaccactttcttggagcatccgaatgaaggttgctcttgatgctgctaa 34150371  T

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