View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_1D_low_48 (Length: 222)
Name: NF0254_1D_low_48
Description: NF0254_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_1D_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 44871744 - 44871531
Alignment:
| Q |
1 |
attctgaaacctcttgttccagttctgttaaaaaagctacggttactatggtatcaacaacaatggaaaatgagaatcatgcgagtcaatctgaaccaga |
100 |
Q |
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| T |
44871744 |
attctgaaacctcttgttccagttctgttaaaaaagctacggttactatggtatcaacaacaatggaaaatgagaatcatgtgagtcaatctgaaccaga |
44871645 |
T |
|
| Q |
101 |
agttacaaattcggtgggtagtggtaaaaaactaaaggttttaaaaactattaaaatggagaagaatttggagggttatggtagaagagggaaagtattg |
200 |
Q |
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| T |
44871644 |
agttacaaattcggtgggtagtggtaaaaaactaaaggttttaaaaactattaaaatggagaagaatttggagggttatggtagaagagggaaagtattg |
44871545 |
T |
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| Q |
201 |
aagatgagtataat |
214 |
Q |
| |
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|||||||||||||| |
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| T |
44871544 |
aagatgagtataat |
44871531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 47528159 - 47528287
Alignment:
| Q |
1 |
attctgaaacctcttgttccagttctgttaaaaaagctacggttactatggtatcaacaacaatggaaaatgagaatcatgcgagtcaatctgaaccaga |
100 |
Q |
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|||||||| ||||| ||| || ||||||||||||||| |||||||||| |||||||| ||| |||||||||||| |||| || ||||||| ||||||| |
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| T |
47528159 |
attctgaagcctctagtttcatttctgttaaaaaagccacggttactacattatcaacatcaacggaaaatgagaagcatgtgattcaatctaaaccaga |
47528258 |
T |
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| Q |
101 |
agttacaaattcggtgggtagtggtaaaa |
129 |
Q |
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| T |
47528259 |
agttactaattcggtgggtagtggtaaaa |
47528287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 50 - 214
Target Start/End: Original strand, 47522584 - 47522748
Alignment:
| Q |
50 |
ggtatcaacaacaatggaaaatgagaatcatgcgagtcaatctgaaccagaagttacaaattcggtgggtagtggtaaaaaactaaaggttttaaaaact |
149 |
Q |
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|||| ||||| |||||||||||||||| |||| |||| ||| |||| ||||| ||| ||||||| ||||||| ||||| | ||||||||||||||| |
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| T |
47522584 |
ggtaccaacatcaatggaaaatgagaagcatgtgagtaaatttgaatcagaacttaatgattcggtaggtagtgataaaagaggaaaggttttaaaaacg |
47522683 |
T |
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| Q |
150 |
attaaaatggagaagaatttggagggttatggtagaagagggaaagtattgaagatgagtataat |
214 |
Q |
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| T |
47522684 |
agtttaatggagaagaattcagaggattgtggtagaagagggaaagtattaaagacaagtataat |
47522748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 47549846 - 47549971
Alignment:
| Q |
10 |
cctcttgttccagttctgttaaaaaagctacggttactatggtatcaa---caac---aatggaaaatgagaatcatgcgagtcaatctgaaccagaagt |
103 |
Q |
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||||| ||||| | ||||||||||||||||| | |||| |||||||| |||| || |||||||||||| |||| ||||||||||||| ||||||| |
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| T |
47549846 |
cctctagttccggctctgttaaaaaagctacactaactacggtatcaagatcaacttcaaaggaaaatgagaaacatgtgagtcaatctgaatcagaagt |
47549945 |
T |
|
| Q |
104 |
tacaaattcggtgggtagtggtaaaa |
129 |
Q |
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| | ||||| |||| ||||||||||| |
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| T |
47549946 |
ttctaattcagtggatagtggtaaaa |
47549971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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