View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0254_1D_low_5 (Length: 409)
Name: NF0254_1D_low_5
Description: NF0254_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0254_1D_low_5
Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 7 - 404
Target Start/End: Original strand, 9839327 - 9839724
Alignment:
Q
7
gtttccaccaagtaccaactcaattttcaacatgtatgatgatggaagcagataattgcaaatccactaactcaatttccatgaacttcagagtagctaa
106
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
9839327
gtttccaccaagtaccaactcaattttcaacatgtatgatgatggaagcagataattgcaaatccactaactcaatttccatgaacttcagagtagctaa
9839426
T
Q
107
cattattatggattctgaaaagactatgcactaaattacgctagtagcaaaagcatttttactctaccatttgtgtgagcttgcatttggggtcaaactg
206
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
T
9839427
cattattatggattctgaaaagactatgcactaaattacgctagtagcaaaagcatttttactgtaccatttgtgtgagcttgcatttgaggtcaaactg
9839526
T
Q
207
ctggccaaccaaaacaaagatatttgggagactatccaaaacaatagtgtcttttgtctttaaaccatcatcgaaaaagtcgttacctctgttaactcaa
306
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
T
9839527
ctggccaaccaaaacaaagatatttgggagactatccaaaacaatagtgtcttttgtctttaaaccatcttcgaaaaagtcgttacctctgttaactcaa
9839626
T
Q
307
ccagtagatgaatgtaagtatttctcatcttcatgtatttctgcaaaataaatcaaattactaatagtcataagtagtatgccacacaaacaccaaac
404
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
9839627
ccagtagatgaatgtaagtatttctcatcttcatgtatttctgcaaaataaatcaaattactaatagtcataagtagtatgccacacaaacaccaaac
9839724
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 94
Target Start/End: Original strand, 9839239 - 9839273
Alignment:
Q
60
aattgcaaatccactaactcaatttccatgaactt
94
Q
|||| ||||||||||||||||||||||||||||||
T
9839239
aattccaaatccactaactcaatttccatgaactt
9839273
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 52 - 177
Target Start/End: Original strand, 6852634 - 6852759
Alignment:
Q
52
aagcagataattgcaaatccactaactcaatttccatgaacttcagagtagctaacattattatggattctgaaaagactatgcactaaattacgctagt
151
Q
|||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||| || |||||| |||||||||| |||||||||| | | ||
T
6852634
aagcagataattccaaatccaccaactcaatttccatgcacttcagagtagctaacattatcatagattctaaaaagactatccactaaattatgttggt
6852733
T
Q
152
agcaaaagcatttttactctaccatt
177
Q
||||||| || |||||| |||||||
T
6852734
agcaaaaccagttttaccataccatt
6852759
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 6852515 - 6852551
Alignment:
Q
60
aattgcaaatccactaactcaatttccatgaacttca
96
Q
|||| ||||||||||||||||||||||||| ||||||
T
6852515
aattccaaatccactaactcaatttccatggacttca
6852551
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 24352149 - 24352080
Alignment:
Q
7
gtttccaccaagtaccaactcaattttcaacatgtatgatgatggaagcagataattgcaaatccactaa
76
Q
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
T
24352149
gtttccaccaagtactaactcaattttcaacatgtatgatgatggaagcagataattccaaatccactaa
24352080
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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