View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0254_1D_low_50 (Length: 218)

Name: NF0254_1D_low_50
Description: NF0254_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0254_1D_low_50
NF0254_1D_low_50
[»] chr4 (3 HSPs)
chr4 (1-218)||(2901604-2901821)
chr4 (1-100)||(2873004-2873103)
chr4 (1-104)||(2883206-2883309)
[»] chr2 (3 HSPs)
chr2 (5-105)||(44226355-44226455)
chr2 (5-105)||(44237153-44237253)
chr2 (17-106)||(44214184-44214273)
[»] chr7 (5 HSPs)
chr7 (13-105)||(39551713-39551805)
chr7 (13-105)||(39359735-39359827)
chr7 (24-104)||(39542498-39542578)
chr7 (13-106)||(39568559-39568652)
chr7 (13-72)||(39345190-39345249)
[»] chr8 (1 HSPs)
chr8 (2-88)||(4496147-4496233)
[»] chr1 (2 HSPs)
chr1 (11-88)||(2152544-2152621)
chr1 (5-88)||(2164800-2164883)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 2901821 - 2901604
Alignment:
Q  1 tgcatatattagtcaacatgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttggatcacgttatggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2901821 tgcatatattagtcaacatgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttggatcacgttatggt 2901722  T
Q  101 tagtcattttctacacaaattccttgtcnnnnnnncctatctaacttatccctcatatctaattgcgagcttcttaattatgtcacatttctataaaaac 200  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2901721 tagtcattttctacacaaattccttgtctttttttcctatctaacttatccctcatatctaattgcgagcttctttattatgtcacatttctataaaaac 2901622  T
Q  201 cacacatgtgtccggaaa 218  Q
    ||||||||||||||||||    
T  2901621 cacacatgtgtccggaaa 2901604  T

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Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 2873004 - 2873103
Alignment:
Q  1 tgcatatattagtcaacatgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttggatcacgttatggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||    
T  2873004 tgcatatattagtcaacatgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggagttggatcaagatatggt 2873103  T

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Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 2883206 - 2883309
Alignment:
Q  1 tgcatatattagtcaacatgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttggatcacgttatggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||||||||||    
T  2883206 tgcatatattagtcaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaaggtgccaaggtgtcggatcacgttatggt 2883305  T
Q  101 tagt 104  Q
    ||||    
T  2883306 tagt 2883309  T

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Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 44226455 - 44226355
Alignment:
Q  5 tatattagtcaacatgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttggatcacgttatggttagt 104  Q
    ||||| || |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44226455 tatataagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaaggtgccaaggagttggatcacgttatggttagt 44226356  T
Q  105 c 105  Q
    |    
T  44226355 c 44226355  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 44237253 - 44237153
Alignment:
Q  5 tatattagtcaacatgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttggatcacgttatggttagt 104  Q
    ||||| || |||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  44237253 tatatcagccaacatgatgttcatattggagaaatgactgtgagagaaaccttggctttctcagcaagatgccaaggagttggatcacgttatggttagt 44237154  T
Q  105 c 105  Q
    |    
T  44237153 c 44237153  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 44214273 - 44214184
Alignment:
Q  17 catgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttggatcacgttatggttagtca 106  Q
    ||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||| |||||||| ||||| ||| |||||    
T  44214273 catgatgttcacattggagaaatgactgtgagggaaaccttagctttctcagcaaggtgccaaggagttggatctcgttacggtgagtca 44214184  T

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Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 39551805 - 39551713
Alignment:
Q  13 tcaacatgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttggatcacgttatggttagtc 105  Q
    |||| ||||| |||| |||||||||||||||||||| ||||| ||||||||||||||||||  |||||| |||||  | ||||||||||||||    
T  39551805 tcaaaatgatcttcacattggagaaatgactgttagagaaaccttggctttctcagcaagggtccaaggagttgggcctcgttatggttagtc 39551713  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 39359735 - 39359827
Alignment:
Q  13 tcaacatgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttggatcacgttatggttagtc 105  Q
    |||| ||||| |||| |||||||||||||||||||| ||||| ||||| |||||||| ||   |||||| |||||| | ||||||||||||||    
T  39359735 tcaaaatgatcttcacattggagaaatgactgttagagaaaccttggccttctcagctagagtccaaggagttggacctcgttatggttagtc 39359827  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 39542578 - 39542498
Alignment:
Q  24 ttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttggatcacgttatggttagt 104  Q
    |||| |||||||||||||||||||| ||||| ||||| ||||| ||||||  |||||| |||||  | |||||||||||||    
T  39542578 ttcacattggagaaatgactgttagagaaaccttggccttctcggcaagggtccaaggagttgggccgcgttatggttagt 39542498  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 39568652 - 39568559
Alignment:
Q  13 tcaacatgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttggatcacgttatggttagtca 106  Q
    |||| ||||| |||| |||||||||||||| || || ||||| ||||| ||||||||| |   |||||| |||||| | |||||||||||||||    
T  39568652 tcaaaatgatcttcacattggagaaatgacagtaagagaaaccttggccttctcagcacgagtccaaggagttggacctcgttatggttagtca 39568559  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 39345190 - 39345249
Alignment:
Q  13 tcaacatgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaag 72  Q
    |||| ||||| |||| ||||||||| |||||||||| ||||||||||| ||||| |||||    
T  39345190 tcaaaatgatcttcacattggagaattgactgttagagaaacattggccttctcggcaag 39345249  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 4496147 - 4496233
Alignment:
Q  2 gcatatattagtcaacatgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttgga 88  Q
    ||||||||||||||| ||||||||||| |||||||||||||||| |  ||||| || | ||| ||||| || |||||||| ||||||    
T  4496147 gcatatattagtcaaaatgatgttcatgttggagaaatgactgtaaaagaaaccttagatttttcagctagatgccaaggagttgga 4496233  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 2152621 - 2152544
Alignment:
Q  11 agtcaacatgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttgga 88  Q
    |||||| |||||  ||| ||||||||||||||||| || |||||| |||||||||||||||| || ||||| ||||||    
T  2152621 agtcaatatgataatcacattggagaaatgactgtgagagaaacactggctttctcagcaagatgtcaaggggttgga 2152544  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 2164883 - 2164800
Alignment:
Q  5 tatattagtcaacatgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttgga 88  Q
    ||||| ||||||||||||  ||| |||||||||||||| || || |||||  | |||||||||||||| || ||||| ||||||    
T  2164883 tatataagtcaacatgataatcacattggagaaatgaccgtaagagaaaccctagctttctcagcaagatgtcaaggggttgga 2164800  T

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