View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_1D_low_52 (Length: 210)
Name: NF0254_1D_low_52
Description: NF0254_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_1D_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 2 - 205
Target Start/End: Complemental strand, 29105049 - 29104846
Alignment:
| Q |
2 |
cgacagagatgaagccattcagtatattcaccacgttcaccaacttcaaagagccatgcactcgttactcgagctcgaaccatcgtctccgaaactcatc |
101 |
Q |
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| T |
29105049 |
cgacagaaacgaagccattcagtatattcaccacgttaaccaacttcaaagagccatgcactcgttactcgagctcgaaccatcgtctccgaaactcatc |
29104950 |
T |
|
| Q |
102 |
catgcacaaaacctaatgcaaatcgctatgaagaggctccaaaaagagttttaccagatattaaccatgaaccaggcttgcttagacgctgaatccttct |
201 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29104949 |
catgctcaaaacctaatgcaaatcgctatgaagaggctccaaaaagagttttaccagatattaaccatgaaccaggcctgcttagacgctgaatccttct |
29104850 |
T |
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| Q |
202 |
ctgt |
205 |
Q |
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|||| |
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| T |
29104849 |
ctgt |
29104846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 29090779 - 29090588
Alignment:
| Q |
11 |
tgaagccattcagtatattcaccacgttcaccaacttcaaagagccatgcactcgttactcgagctcgaaccatcgtctccgaaactcatccatgcacaa |
110 |
Q |
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||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
29090779 |
tgaagccattcagtacattcaccacgttaaccaacttcaaagagccatgcactcgttactcgagctcgaaccatcgtctccagaactcatccacgcacaa |
29090680 |
T |
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| Q |
111 |
aacctaatgcaaatcgctatgaagaggctccaaaaagagttttaccagatattaaccatgaaccaggcttgcttagacgctgaatccttctc |
202 |
Q |
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|||||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||||||| | ||||||| ||||||||||||| |
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| T |
29090679 |
aacctaatgcaaattgctatgaagaggctccaaaaagaattctaccagatcttaaccatgaaccaggcatacttagactctgaatccttctc |
29090588 |
T |
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