View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0254_1D_low_55 (Length: 204)
Name: NF0254_1D_low_55
Description: NF0254_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_1D_low_55 |
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| [»] scaffold0003 (2 HSPs) |
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| [»] scaffold0131 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 46 - 153
Target Start/End: Complemental strand, 111898 - 111791
Alignment:
| Q |
46 |
tctataacaagaaaaatacaaatcagttactctgctgaaattcattttcacagtaagatttttaaaattactacaaaattatacataggaaactaaatcc |
145 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
111898 |
tctataacaagaaaaatacaaattagttactctgctgaaattcattttcacagtaagatttttaaaattactacaaaattatacataggaaactaaatcc |
111799 |
T |
|
| Q |
146 |
taaacttc |
153 |
Q |
| |
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|||||||| |
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| T |
111798 |
taaacttc |
111791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 111772 - 111708
Alignment:
| Q |
140 |
aaatcctaaacttcacaatcagcatagataaaagataaattattacttcaagaacaacaaaacag |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
111772 |
aaatcctaaacttcacaatcagcatagataaaagataaattattacttcaagaacaacaaaacag |
111708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 46 - 153
Target Start/End: Complemental strand, 135083 - 134976
Alignment:
| Q |
46 |
tctataacaagaaaaatacaaatcagttactctgctgaaattcattttcacagtaagatttttaaaattactacaaaattatacataggaaactaaatcc |
145 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
135083 |
tctataacaagaaaaatacaaaccagttactctgctgaaattcattttcacagtaagatttttaaaattactacaaaattatacataggaaactaaatcc |
134984 |
T |
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| Q |
146 |
taaacttc |
153 |
Q |
| |
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|||||||| |
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| T |
134983 |
taaacttc |
134976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 134957 - 134893
Alignment:
| Q |
140 |
aaatcctaaacttcacaatcagcatagataaaagataaattattacttcaagaacaacaaaacag |
204 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
134957 |
aaatcctaaacttcacaatcagcatagataaaagataaattattacttcaagaacaacaaaacag |
134893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 9884658 - 9884707
Alignment:
| Q |
46 |
tctataacaagaaaaatacaaatcagttactctgctgaaattcattttca |
95 |
Q |
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| T |
9884658 |
tctataacaagaaaaattcaaatcagttactctgctgaaattcattttca |
9884707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 20421258 - 20421209
Alignment:
| Q |
46 |
tctataacaagaaaaatacaaatcagttactctgctgaaattcattttca |
95 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
20421258 |
tctataacaagaaaaattcaaatcagttactctgctgaaattcattttca |
20421209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 12206 - 12156
Alignment:
| Q |
113 |
ttactacaaaattatacataggaaactaaatcctaaacttcacaatcagca |
163 |
Q |
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||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
12206 |
ttactacaatattatacataggaaactaaatcgtaaacttcacaatcagca |
12156 |
T |
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