View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_1D_low_56 (Length: 204)
Name: NF0254_1D_low_56
Description: NF0254_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_1D_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 34819040 - 34818866
Alignment:
| Q |
21 |
aaaatgcctcaacttgtctatgtttcgagagagagaaagtcttctagtccccaccatttcaaagctggagccctcaatgttcttgtacggccatcatttt |
120 |
Q |
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| T |
34819040 |
aaaatgcctcaacttgtctatgtttcgagagagagaaagtcttctagtccccaccatttcaaagctggagccctcaatgttcttgtacggccatcatttt |
34818941 |
T |
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| Q |
121 |
atcttccaaagtatatatacaaaacttgctttacaagcacagcaaatgtaatgatttcatgtcttgcagaataat |
195 |
Q |
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| T |
34818940 |
atcttccaaagtatatatacaaaacttgctttacaagcacagcaaatgtaatgatttcatgtcttgcataataat |
34818866 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 32722429 - 32722397
Alignment:
| Q |
75 |
catttcaaagctggagccctcaatgttcttgta |
107 |
Q |
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| T |
32722429 |
catttcaaagctggagccctcaatgtccttgta |
32722397 |
T |
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