View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_1D_low_6 (Length: 395)
Name: NF0254_1D_low_6
Description: NF0254_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_1D_low_6 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 32 - 395
Target Start/End: Original strand, 9070419 - 9070778
Alignment:
| Q |
32 |
attctcaatttataagtagtagtaattgaatcactttcaannnnnnnnaaactcgtgagatgtgaccaattaggttcatgaatttgttggacgttaataa |
131 |
Q |
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| T |
9070419 |
attctcaatttataagtagta---attgaatcactttcaattgtttttaaactcgtgagatgtgaccaattaaattcatgaatttgttggacgttgataa |
9070515 |
T |
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| Q |
132 |
atttgatttgagattaagaaattgacaaaatgtctctaaaattataaattattgttcattttagttcatatgtcaccttctgctactaattctctcaatt |
231 |
Q |
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| T |
9070516 |
atttgatttaagattaagaaattgacaaaatgtctctaaaattataaattattgctcattttagttcatatgtcaccttctgctactaattctctcaatt |
9070615 |
T |
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| Q |
232 |
aataaaaaattaagcaatggtatgtctcacctcttgaaaattcatatttccnnnnnnngaaagtttcattgtttaacctaattggaaatggactgatttg |
331 |
Q |
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| T |
9070616 |
aataaaaaattaagcaatggtatgtctcacctcttgaaaattcatatttccaaaaaaagaaagtttcattgtttaacctaattggaaatggactgatttg |
9070715 |
T |
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| Q |
332 |
gaagcaatggtatggtggggtcacctttaacccttttagctaacatgcgttgccttattgcctg |
395 |
Q |
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| T |
9070716 |
gaagctatggtatggtggggtcacctttaa-ccttttagctaacatgcattgccttattgcctg |
9070778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 126
Target Start/End: Original strand, 9066441 - 9066482
Alignment:
| Q |
87 |
tgagatgtgaccaatta--ggttcatgaatttgttggacgtt |
126 |
Q |
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| T |
9066441 |
tgagatgtgaccaattataggttcatgaatttgttggacgtt |
9066482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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