View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_1D_low_7 (Length: 379)
Name: NF0254_1D_low_7
Description: NF0254_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0254_1D_low_7 |
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[»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 22 - 376
Target Start/End: Complemental strand, 24494766 - 24494412
Alignment:
Q |
22 |
gtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcactgaatgcataaagattttgagaagaagtgtgcttcaagtgaa |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
24494766 |
gtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcactgaatgcataaagattttgagaagaagtgtgcttcaagtgaa |
24494667 |
T |
 |
Q |
122 |
gtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggatgtaaagtgtgtagatgatggatgttgcatgaattgtgcaagcttatttac |
221 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
24494666 |
gtccatgaaacatggtggctttgagatatcaaagaagtcttttcaaggctgtaaagtgtgtagatgatggatgttgcatgaattgtgcaagcttatttac |
24494567 |
T |
 |
Q |
222 |
agtgtaggctatgtcaggccttgtcatggataaatattgtagagcccctatgacgcttctgtattccgtactatctgctgcacttgcgccatcagattta |
321 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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T |
24494566 |
agtgtaggctatgtcaggccttgtcatggaaaaatattgtagagcccctatgacgcttctgtattccgtactatctgctacacttgcgccatcagattta |
24494467 |
T |
 |
Q |
322 |
gtaagaggagaggatgtagacatcggtgaatggacaatctttgcatccttcatct |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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T |
24494466 |
gtaagaggagaggatgtagacatcggtgaatggacaatctttgcatctttcatct |
24494412 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0003 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 22 - 376
Target Start/End: Complemental strand, 94116 - 93762
Alignment:
Q |
22 |
gtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcactgaatgcataaagattttgagaagaagtgtgcttcaagtgaa |
121 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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T |
94116 |
gtaacatgtgcagaggtggatgtataatcatctcgatttccagcccaatcggcatcactgaatgcatatagattttgagaagaagtgcacttcaagtgaa |
94017 |
T |
 |
Q |
122 |
gtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggatgtaaagtgtgtagatgatggatgttgcatgaattgtgcaagcttatttac |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |
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T |
94016 |
gtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggttgtaaagtgtgtagatgatggatattgcatgaactgtgcaaacttatttac |
93917 |
T |
 |
Q |
222 |
agtgtaggctatgtcaggccttgtcatggataaatattgtagagcccctatgacgcttctgtattccgtactatctgctgcacttgcgccatcagattta |
321 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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T |
93916 |
agtgtaggctatgtcaggccttgtcatggacaaatattgtagagcccctatgacgcttctgtattccgtactatctgcttcacttgcgccatcagattta |
93817 |
T |
 |
Q |
322 |
gtaagaggagaggatgtagacatcggtgaatggacaatctttgcatccttcatct |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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T |
93816 |
gtaagaggagaggatgtagacatcggtgaatggacaatctttgcatctttcatct |
93762 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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