View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0254_1D_low_7 (Length: 379)

Name: NF0254_1D_low_7
Description: NF0254_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0254_1D_low_7
NF0254_1D_low_7
[»] chr6 (1 HSPs)
chr6 (22-376)||(24494412-24494766)
[»] scaffold0003 (1 HSPs)
scaffold0003 (22-376)||(93762-94116)


Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 22 - 376
Target Start/End: Complemental strand, 24494766 - 24494412
Alignment:
22 gtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcactgaatgcataaagattttgagaagaagtgtgcttcaagtgaa 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
24494766 gtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcactgaatgcataaagattttgagaagaagtgtgcttcaagtgaa 24494667  T
122 gtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggatgtaaagtgtgtagatgatggatgttgcatgaattgtgcaagcttatttac 221  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
24494666 gtccatgaaacatggtggctttgagatatcaaagaagtcttttcaaggctgtaaagtgtgtagatgatggatgttgcatgaattgtgcaagcttatttac 24494567  T
222 agtgtaggctatgtcaggccttgtcatggataaatattgtagagcccctatgacgcttctgtattccgtactatctgctgcacttgcgccatcagattta 321  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
24494566 agtgtaggctatgtcaggccttgtcatggaaaaatattgtagagcccctatgacgcttctgtattccgtactatctgctacacttgcgccatcagattta 24494467  T
322 gtaagaggagaggatgtagacatcggtgaatggacaatctttgcatccttcatct 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
24494466 gtaagaggagaggatgtagacatcggtgaatggacaatctttgcatctttcatct 24494412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 22 - 376
Target Start/End: Complemental strand, 94116 - 93762
Alignment:
22 gtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcactgaatgcataaagattttgagaagaagtgtgcttcaagtgaa 121  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||    
94116 gtaacatgtgcagaggtggatgtataatcatctcgatttccagcccaatcggcatcactgaatgcatatagattttgagaagaagtgcacttcaagtgaa 94017  T
122 gtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggatgtaaagtgtgtagatgatggatgttgcatgaattgtgcaagcttatttac 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| |||||||||    
94016 gtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggttgtaaagtgtgtagatgatggatattgcatgaactgtgcaaacttatttac 93917  T
222 agtgtaggctatgtcaggccttgtcatggataaatattgtagagcccctatgacgcttctgtattccgtactatctgctgcacttgcgccatcagattta 321  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
93916 agtgtaggctatgtcaggccttgtcatggacaaatattgtagagcccctatgacgcttctgtattccgtactatctgcttcacttgcgccatcagattta 93817  T
322 gtaagaggagaggatgtagacatcggtgaatggacaatctttgcatccttcatct 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
93816 gtaagaggagaggatgtagacatcggtgaatggacaatctttgcatctttcatct 93762  T

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