View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0254_1D_low_8 (Length: 360)

Name: NF0254_1D_low_8
Description: NF0254_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0254_1D_low_8
NF0254_1D_low_8
[»] chr2 (1 HSPs)
chr2 (39-360)||(14812670-14812993)


Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 39 - 360
Target Start/End: Complemental strand, 14812993 - 14812670
Alignment:
Q  39 gtcaaggttaaccaaatgttaatagaggtactcacggattgtctacaataaagattcatacattgatagc-aagagttaaacacacgctcttttagaata 137  Q
    ||||||||||||||||||||||||||||||||||  ||| | |||||||||||||||||||||||||| | |||||||||||||| ||||||| ||||||    
T  14812993 gtcaaggttaaccaaatgttaatagaggtactcattgatcgcctacaataaagattcatacattgataactaagagttaaacacaagctctttcagaata 14812894  T
Q  138 tgaatcaaatccttgtcaggtgaatcaaccttcactaatgtgacgatgttaagaaaatttagtagattcaatgggacattatttgtttggataaggagaa 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14812893 tgaatcaaatccttgtcaggtgaatcaaccttcactaatgtgacgatgttaagaaaatttaatagattcaatgggacattatttgtttggataaggagaa 14812794  T
Q  238 aggatg-ttcggggtttagagattagtggagtttaatttggctctattaggttaatgatgttggaggatgcatttggagcatagaagtctttaattaaag 336  Q
    |||||| || ||||||||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| ||||||| |||||||||||||    
T  14812793 aggatgtttgggggtttagaggttagtggagtttaatttagctctatttggtaaatgatgttggaggatgcatttggaacatagaaatctttaattaaag 14812694  T
Q  337 tttttagcagttatgtatgtggag 360  Q
    ||||||| ||||||||||||||||    
T  14812693 tttttagtagttatgtatgtggag 14812670  T

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