View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_1D_low_9 (Length: 327)
Name: NF0254_1D_low_9
Description: NF0254_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_1D_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 25199721 - 25199904
Alignment:
| Q |
1 |
aaatggaacaactaattccagttttgatcacatcaaatacatggcaagaaaataatgattcttttctatcaaatgtcattcttggatagatattttcaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
25199721 |
aaatggaacaactaattccagttttgatcacatcaaatacatggcaagaaaataatgattcttttctatcaaatctcattcttggatagatatattcaaa |
25199820 |
T |
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| Q |
101 |
aataaactaacatgtcaaaagaccgataaatgtcacatacattataagaacaacatttaaaacgagacagcaccaataatcaac |
184 |
Q |
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| T |
25199821 |
aataaactcacatgtcaaaagaccgataaatgtcacatacattataagaacaacatttaaaacgagacagcaccaataatcaac |
25199904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 241 - 325
Target Start/End: Original strand, 25199961 - 25200046
Alignment:
| Q |
241 |
cctctaaaaagatcactgttaggcaacaaatcaaagaggcaaacatagggac-aaatatcctcattagacatagcaacaccaaact |
325 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||| | |||||| |
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| T |
25199961 |
cctctaaaaagatcactgttaggcaacaaagcaaagaggcgaacatagggacaaaatatcctcattagacatagcaagatcaaact |
25200046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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