View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0254_2D_high_2 (Length: 409)

Name: NF0254_2D_high_2
Description: NF0254_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0254_2D_high_2
NF0254_2D_high_2
[»] chr4 (12 HSPs)
chr4 (121-287)||(7101395-7101561)
chr4 (135-276)||(7146786-7146927)
chr4 (55-122)||(7101244-7101311)
chr4 (329-391)||(23702939-23703001)
chr4 (135-238)||(7115326-7115429)
chr4 (329-391)||(35786133-35786195)
chr4 (329-391)||(38157595-38157657)
chr4 (329-391)||(55018323-55018385)
chr4 (331-381)||(39336818-39336868)
chr4 (60-122)||(7115161-7115223)
chr4 (16-54)||(7101188-7101226)
chr4 (16-54)||(7146233-7146271)
[»] chr3 (1 HSPs)
chr3 (329-391)||(33780918-33780980)
[»] chr2 (1 HSPs)
chr2 (329-391)||(42929508-42929570)
[»] scaffold0060 (1 HSPs)
scaffold0060 (329-391)||(12364-12426)
[»] chr8 (1 HSPs)
chr8 (329-387)||(21143056-21143114)
[»] chr5 (1 HSPs)
chr5 (329-391)||(13374786-13374848)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 9e-80; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 121 - 287
Target Start/End: Original strand, 7101395 - 7101561
Alignment:
Q  121 aggacacatgtttcctccgatagaatgtattgacgcaattgttaatacatctctccactaatgaattatacaacctgagacggcaactttgttgtaacaa 220  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||    
T  7101395 aggacacatgtttcctccgatagaatgtattgacacaattgttaatacatctctcgtctaatgaattatacaacctgagacgacaactttgttgtaacaa 7101494  T
Q  221 agaataaatcaacaaaatatatcttatgctactagatcaaataaaacttctgcattcatatcgttac 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7101495 agaataaatcaacaaaatatatcttatgctactagatcaaataaaacttctgcattcatatcgttac 7101561  T

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Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 135 - 276
Target Start/End: Original strand, 7146786 - 7146927
Alignment:
Q  135 ctccgatagaatgtattgacgcaattgttaatacatctctccactaatgaattatacaacctgagacggcaactttgttgtaacaaagaataaatcaaca 234  Q
    ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||| |||| |||| ||||||| |||||||||||||||||||    
T  7146786 ctccgatagaatgaactgacgcaattgttaaaacatctctccactaatgaattatacaacctaagactgcaattttgttggaacaaagaataaatcaaca 7146885  T
Q  235 aaatatatcttatgctactagatcaaataaaacttctgcatt 276  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7146886 aaatatatcttatgctactagatcaaataaaacttctgcatt 7146927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 7101244 - 7101311
Alignment:
Q  55 ctttctttgaatcttctatttggatcctcaacataatgccagcttgcaatattgtttgtctgttgtag 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7101244 ctttctttgaatcttctatttggatcctcaacataatgccagcttgcaatattgtttgtctgttgtag 7101311  T

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Target: chr4; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 329 - 391
Target Start/End: Original strand, 23702939 - 23703001
Alignment:
Q  329 tgtcacaatgaaacaaccatttctcttcatcttctccatagaagatgtctcaaacccaacaac 391  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23702939 tgtcacaatgaaacaaccttttctcttcatcttctccatagaagatgtctcaaacccaacaac 23703001  T

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Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 7115326 - 7115429
Alignment:
Q  135 ctccgatagaatgtattgacgcaattgttaatacatctctccactaatgaattatacaacctgagacggcaactttgttgtaacaaagaataaatcaaca 234  Q
    |||||||||||||| ||||| |||||||||| |||||||||||||| |||||||||||| |  ||||  ||| ||||||| |||| ||||||||||||||    
T  7115326 ctccgatagaatgttttgacacaattgttaaaacatctctccactagtgaattatacaatccaagactacaattttgttggaacagagaataaatcaaca 7115425  T
Q  235 aaat 238  Q
    ||||    
T  7115426 aaat 7115429  T

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Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 329 - 391
Target Start/End: Complemental strand, 35786195 - 35786133
Alignment:
Q  329 tgtcacaatgaaacaaccatttctcttcatcttctccatagaagatgtctcaaacccaacaac 391  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  35786195 tgtcacaatgaaacaaccttttctcttcatcttctccatagaaggtgtctcaaacccaacaac 35786133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 329 - 391
Target Start/End: Original strand, 38157595 - 38157657
Alignment:
Q  329 tgtcacaatgaaacaaccatttctcttcatcttctccatagaagatgtctcaaacccaacaac 391  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  38157595 tgtcacaatgaaacaaccttttctcttcatcttctccatagaagaagtctcaaacccaacaac 38157657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 329 - 391
Target Start/End: Original strand, 55018323 - 55018385
Alignment:
Q  329 tgtcacaatgaaacaaccatttctcttcatcttctccatagaagatgtctcaaacccaacaac 391  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  55018323 tgtcacaatgaaacaaccttttctcttcatcttctccatagaagaagtctcaaacccaacaac 55018385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 331 - 381
Target Start/End: Original strand, 39336818 - 39336868
Alignment:
Q  331 tcacaatgaaacaaccatttctcttcatcttctccatagaagatgtctcaa 381  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39336818 tcacaatgaaacaaccttttctcttcatcttctccatagaagatgtctcaa 39336868  T

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Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 7115161 - 7115223
Alignment:
Q  60 tttgaatcttctatttggatcctcaacataatgccagcttgcaatattgtttgtctgttgtag 122  Q
    |||||||||| |||||||||||| ||| |||||||| ||| ||||||||||||||||||||||    
T  7115161 tttgaatcttatatttggatcctgaacgtaatgccaacttccaatattgtttgtctgttgtag 7115223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 7101188 - 7101226
Alignment:
Q  16 acatcaatacgaatttagagaagcaccattacaagacct 54  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7101188 acatcaatacgaatttagagaagcaccattacaagacct 7101226  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 7146233 - 7146271
Alignment:
Q  16 acatcaatacgaatttagagaagcaccattacaagacct 54  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  7146233 acatcaataagaatttagagaagcaccagtacaagacct 7146271  T

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Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 329 - 391
Target Start/End: Complemental strand, 33780980 - 33780918
Alignment:
Q  329 tgtcacaatgaaacaaccatttctcttcatcttctccatagaagatgtctcaaacccaacaac 391  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33780980 tgtcacaatgaaacaaccttttctcttcatcttctccatagaagatgtctcaaacccaacaac 33780918  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 329 - 391
Target Start/End: Original strand, 42929508 - 42929570
Alignment:
Q  329 tgtcacaatgaaacaaccatttctcttcatcttctccatagaagatgtctcaaacccaacaac 391  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  42929508 tgtcacaatgaaacaactttttctcttcatcttctccatagaagatgtctcaaacccaacaac 42929570  T

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Target: scaffold0060 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 329 - 391
Target Start/End: Original strand, 12364 - 12426
Alignment:
Q  329 tgtcacaatgaaacaaccatttctcttcatcttctccatagaagatgtctcaaacccaacaac 391  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||    
T  12364 tgtcacaatgaaacaaccttttctcttcgtcttctccatagaagatgtctcaaactcaacaac 12426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 329 - 387
Target Start/End: Original strand, 21143056 - 21143114
Alignment:
Q  329 tgtcacaatgaaacaaccatttctcttcatcttctccatagaagatgtctcaaacccaa 387  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  21143056 tgtcacaatgaaacaaccttttctcttcatcttctccatagaagatgtctcaaatccaa 21143114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 329 - 391
Target Start/End: Complemental strand, 13374848 - 13374786
Alignment:
Q  329 tgtcacaatgaaacaaccatttctcttcatcttctccatagaagatgtctcaaacccaacaac 391  Q
    |||||||||||||||||  |||||||||| |||||||||||||||||| ||||||||||||||    
T  13374848 tgtcacaatgaaacaacattttctcttcaccttctccatagaagatgtatcaaacccaacaac 13374786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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