View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_2D_high_20 (Length: 206)
Name: NF0254_2D_high_20
Description: NF0254_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_2D_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 29421654 - 29421471
Alignment:
| Q |
1 |
aggttcctgtgacaccatgttattctattcttgctgaataatgaccaaagtcactattgtaattatagaaattatagaaatatgggatctaattttaaaa |
100 |
Q |
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| T |
29421654 |
aggttcctttgacaccttgttattctattcttgctgaataatgaccaaagtcactattgtaattatagaaat---------atgggatctaattttaaaa |
29421564 |
T |
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| Q |
101 |
taatccaggggttggtttcataaaaaacaattatgatttgataatttgtgcaatatctgtaattactggataaccatgcaaactattgatgtc |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29421563 |
taatccaggggttggtttcataaaaaacaattatgatttgataatttgtggaatatctgtaattactggataaccatgcaaactattaatgtc |
29421471 |
T |
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