View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0254_2D_high_6 (Length: 339)
Name: NF0254_2D_high_6
Description: NF0254_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0254_2D_high_6
Alignment Details
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 46267195 - 46267052
Alignment:
Q
1
tttaaggttgacatgcacaaatgacacatatgttggaaagaaggaacaagacccgctctaaattgaagagatgattttggatccaaacatttctcacatt
100
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
46267195
tttaaggttgacatgcacaaatgacacatatgttggaaagaaggaacaagacccgctctaaattgaagagatgattttggatccaaacatttctcacatt
46267096
T
Q
101
acattccattttgagaagaaagagaaaccacattatccaacaca
144
Q
||||||||||||||||||||||||||||||||||||||||||||
T
46267095
acattccattttgagaagaaagagaaaccacattatccaacaca
46267052
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 46266945 - 46266867
Alignment:
Q
251
accaggtatataccactattcatattcatataagaatgattatgtttttcccatttacgtatatgtttttattgatgtc
329
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
46266945
accaggtatataccactattcatattcatataagaatgattatgtttttcccatttacgtatatgtttttattgatgtc
46266867
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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