View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_2D_low_1 (Length: 562)
Name: NF0254_2D_low_1
Description: NF0254_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_2D_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 226 - 548
Target Start/End: Original strand, 26461523 - 26461845
Alignment:
| Q |
226 |
gtatatgtttgaggatgatgactaatcggaaccggcataggcctatgaatagggtgtaagtgccacgtggagagatgagaaagctaagaacattggaagg |
325 |
Q |
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| T |
26461523 |
gtatatgtttgaggatgatgactaatcggaaccggcataggcctatgaatagggtgtaagtgccacgtggagagatgagaaagctaagaacattggaagg |
26461622 |
T |
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| Q |
326 |
attcagtggccgatgttgagggggtcaaggatttttagtttagatttagatgtaagttaaagtatggattgttgttgtaacaataacttcttgttaacaa |
425 |
Q |
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| T |
26461623 |
attcagtggccgatgttgagggggtcaaggatttttagtttagatttagatgtaagttaaagtatggattgttgttgtaacaataacttcttgttaacaa |
26461722 |
T |
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| Q |
426 |
aagacaaattaatcaccaattataaaattgttttaggtggaaactgacccattgagaaggacactgacttattctcgattaagaaatgtagttggattta |
525 |
Q |
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| T |
26461723 |
aagacaaattaatcaccaattataaaattgttttaggtggaaactgacccattgagaaggacactgacttattctcgattaagaaatgtagttagattta |
26461822 |
T |
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| Q |
526 |
atttaatctcaatagatgtccat |
548 |
Q |
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| T |
26461823 |
atttaatctcaatagatgtccat |
26461845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 26461298 - 26461484
Alignment:
| Q |
1 |
gtatattagcatcccatagggtcttcctttttaagaagggctactcaactaacttatggttgttatgaaagtcaatttaaagccaagtttacatcaatat |
100 |
Q |
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| T |
26461298 |
gtatattagcatcccatagggtcttcctttttaagaagggctactcaactaacttatggttgttatgaaagtcaatttaaagccaagtttacatcaatat |
26461397 |
T |
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| Q |
101 |
aggtggtgtatagaagaattattgattggggaccgtgtgctaataattaatatcaaatctagtaaactaatgtaacaagttatgtga |
187 |
Q |
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| T |
26461398 |
aggtggtgtatagaagaattattgattggggaccgtgtgctaataattaatatcaaatctagtaaactaatgtaacaagttatgtga |
26461484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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