View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_2D_low_12 (Length: 351)
Name: NF0254_2D_low_12
Description: NF0254_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_2D_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 32685080 - 32684742
Alignment:
| Q |
1 |
tatcttcttttgaacttgaactctcagtttcttaatttcaactgtaacccttttaaaatcagcttctttctgcttttcaagtttatccagggcagtccgc |
100 |
Q |
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| T |
32685080 |
tatcttcttttgaacttgaactctcagtttcttaatttcaactgtaacccttttaaaatcagcttctttctgcttttcaattttatccagggcagtccgc |
32684981 |
T |
|
| Q |
101 |
gctgcattcaacaactccaatccagctgctggtttacaggttaattaatattaaagaactcaaattcaacaactccaatccaactgctggtttcttaatt |
200 |
Q |
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| T |
32684980 |
gctgcattcaacaactccaatccaactgctggtttataggttaattaatattaaagaactcaaattcaacaactccaatccaactgctggtttcttaatt |
32684881 |
T |
|
| Q |
201 |
tctagaatggcgtggcaaaatttttattcaaataatttaagcatttcttttcgaattgatgagttagatctatgaaagcggtatcatccgccaacacttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684880 |
tctagaatggcgtggcaaaatttttattcaaataatttaagcatttcttttcgaattgatgagttagatctatgaaagcggtatcatccgccaacacttt |
32684781 |
T |
|
| Q |
301 |
agtagtctcagattcttatgattcgaggtttgtgatgtc |
339 |
Q |
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| T |
32684780 |
agtagtctcagattcttatgattcgaggtttgtgatgtc |
32684742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 199 - 339
Target Start/End: Original strand, 32559538 - 32559678
Alignment:
| Q |
199 |
tttctagaatggcgtggcaaaatttttattcaaataatttaagcatttcttttcgaattgatgagttagatctatgaaagcggtatcatccgccaacact |
298 |
Q |
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| T |
32559538 |
tttctagaatggcgtggcaaaaattttattcaaataatttaagcatttcttttcgaattgatgagttagatctatgaaagcggtatcatccgctaacact |
32559637 |
T |
|
| Q |
299 |
ttagtagtctcagattcttatgattcgaggtttgtgatgtc |
339 |
Q |
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| T |
32559638 |
ttagtagtctcggattcttatgattcgaggtttgtgatgtc |
32559678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 32683370 - 32683211
Alignment:
| Q |
1 |
tatcttcttttgaacttgaactctcagtttcttaatttcaactgtaacccttttaaaatcagcttctttctgcttttcaagtttatccagggcagtccgc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||| || |||||||||||| ||| |
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| T |
32683370 |
tatcttcttttgaacttgaactctcagtttcttaatttcaactgcagcccttttaaaatcagcttctctctgcttttcaatttcatccagggcagtacgc |
32683271 |
T |
|
| Q |
101 |
gctgcattcaacaactccaatccagctgctggtttacaggttaattaatattaaagaactcaaat |
165 |
Q |
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| T |
32683270 |
gctgcattcaacaactccaa-----ctgctggtttataggttaattaatattaaagaactcaaat |
32683211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 165
Target Start/End: Original strand, 33010960 - 33011092
Alignment:
| Q |
28 |
tttcttaatttcaactgtaacccttttaaaatcagcttctttctgcttttcaagtttatccagggcagtccgcgctgcattcaacaactccaatccagct |
127 |
Q |
| |
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|||||||||||||||| | ||||||||||||||| ||| ||||||||||||| || ||||| |||| || ||||||||||| ||||| ||| || |
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| T |
33010960 |
tttcttaatttcaacttcatcccttttaaaatcagattccttctgcttttcaatttcatccaaggcattcagcgctgcattcgccaacttcaa-----ct |
33011054 |
T |
|
| Q |
128 |
gctggtttacaggttaattaatattaaagaactcaaat |
165 |
Q |
| |
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| T |
33011055 |
gctggtttataggttaattaatattaaagaactcaaat |
33011092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 165
Target Start/End: Complemental strand, 28711125 - 28711086
Alignment:
| Q |
126 |
ctgctggtttacaggttaattaatattaaagaactcaaat |
165 |
Q |
| |
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|||| |||||| |||||||||||||||||||||||||||| |
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| T |
28711125 |
ctgcaggtttagaggttaattaatattaaagaactcaaat |
28711086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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