View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0254_2D_low_16 (Length: 339)
Name: NF0254_2D_low_16
Description: NF0254_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_2D_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 46267195 - 46267052
Alignment:
| Q |
1 |
tttaaggttgacatgcacaaatgacacatatgttggaaagaaggaacaagacccgctctaaattgaagagatgattttggatccaaacatttctcacatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46267195 |
tttaaggttgacatgcacaaatgacacatatgttggaaagaaggaacaagacccgctctaaattgaagagatgattttggatccaaacatttctcacatt |
46267096 |
T |
|
| Q |
101 |
acattccattttgagaagaaagagaaaccacattatccaacaca |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46267095 |
acattccattttgagaagaaagagaaaccacattatccaacaca |
46267052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 46266945 - 46266867
Alignment:
| Q |
251 |
accaggtatataccactattcatattcatataagaatgattatgtttttcccatttacgtatatgtttttattgatgtc |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46266945 |
accaggtatataccactattcatattcatataagaatgattatgtttttcccatttacgtatatgtttttattgatgtc |
46266867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1168 times since January 2019
Visitors: 2573