View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0254_2D_low_2 (Length: 544)

Name: NF0254_2D_low_2
Description: NF0254_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0254_2D_low_2
NF0254_2D_low_2
[»] chr7 (2 HSPs)
chr7 (20-529)||(1516340-1516853)
chr7 (118-236)||(36515877-36515995)
[»] chr5 (3 HSPs)
chr5 (118-194)||(24916352-24916427)
chr5 (118-236)||(24992244-24992362)
chr5 (456-528)||(40444451-40444523)
[»] chr3 (3 HSPs)
chr3 (118-187)||(41943302-41943370)
chr3 (159-252)||(43581037-43581130)
chr3 (118-194)||(52167290-52167365)
[»] chr6 (1 HSPs)
chr6 (118-194)||(26210827-26210902)
[»] chr2 (1 HSPs)
chr2 (118-189)||(38292038-38292108)
[»] scaffold0009 (1 HSPs)
scaffold0009 (118-194)||(216981-217056)


Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 20 - 529
Target Start/End: Complemental strand, 1516853 - 1516340
Alignment:
Q  20 attgattctaagggtgttactccatgttcctaaataaaggtcgtagttgatcattttacacataccaatacataatttttatctttacaaaattatagaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1516853 attgattctaagggtgttactccatgttcctaaataaaggtcgtagttgatcattttacacataccaatacataatttttatctttacaaaattatagaa 1516754  T
Q  120 tttgatatttcgaaattattcattgagacgaaatcgaataacatcttatatattaatatttgtctttataaattattcaaaaatatgatcagaataggtt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1516753 tttgatatttcgaaattattcattgagacgaaatcgaataacatcttatatattaatatttgtctttataaattattcaaaaatatgatcagaataggtt 1516654  T
Q  220 atgtaaatagtacacatgatcaaattacgacatattttgaaacgaagagaaaatataatatcggcccttgaaaagtattagatgttacatatctcaaaat 319  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1516653 atgtaaatagtacacatgatcaaattacgacatatttagaaacgaagagaaaatataatatcggcccttgaaaagtattagatgttacatatctcaaaat 1516554  T
Q  320 ttcgtttaaagtatcaatc----nnnnnnnnnnnnnnngtatggctttatgaatataggatagggttctttaactggggggaatttgagttagtaaaatt 415  Q
    |||||||||||||||||||                   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1516553 ttcgtttaaagtatcaatctttttttttttttttttttgtatggctttatgaatataggatagggttctttaactggggggaatttgagttagtaaaatt 1516454  T
Q  416 aagtatataagataagatgaatggtaagaattagagaaagtaccattatgcttaaaggagcagcaaagactgcaatgttaaaaatggcacaaatcaaccc 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1516453 aagtatataagataagatgaatggtaagaattagagaaagtaccattatgcttaaaggagcagcaaagactgcaatgttaaaaatggcacaaatcaaccc 1516354  T
Q  516 aacagcatgaacac 529  Q
    ||||||||||||||    
T  1516353 aacagcatgaacac 1516340  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 36515995 - 36515877
Alignment:
Q  118 aatttgatatttcgaaattattcattgagacgaaatcgaataacatcttatatattaatatttgtctttataaatt-attcaaaaatatgatcagaatag 216  Q
    |||||||||||| ||||  |||||||||||| |||| ||| ||||||||||||| ||| |||||| |||||| ||| ||| ||||||||| | | | ||     
T  36515995 aatttgatattttgaaaacattcattgagac-aaattgaacaacatcttatatactaacatttgtatttatatattgattaaaaaatatggttaaagtaa 36515897  T
Q  217 gttatgtaaatagtacacat 236  Q
    ||| ||| ||||||||||||    
T  36515896 gttgtgtgaatagtacacat 36515877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 24916352 - 24916427
Alignment:
Q  118 aatttgatatttcgaaattattcattgagacgaaatcgaataacatcttatatattaatatttgtctttataaatta 194  Q
    |||||||||||| |||| ||||||||||||| ||||| || ||||||||||||  |||||||||| |||||||||||    
T  24916352 aatttgatattttgaaaatattcattgagac-aaatcaaacaacatcttatatgctaatatttgtatttataaatta 24916427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 24992244 - 24992362
Alignment:
Q  118 aatttgatatttcgaaattattcattgagacgaaatcgaataacatcttatatattaatatttgtctttataaatta-ttcaaaaatatgatcagaatag 216  Q
    |||||| ||||| |||| ||||||||||||| ||||| || ||||||||||||  |||||||||| ||||||||||| || ||||||||| ||| | ||     
T  24992244 aatttggtattttgaaaatattcattgagac-aaatcaaacaacatcttatatgctaatatttgtatttataaattagttaaaaaatatggtcaaagtaa 24992342  T
Q  217 gttatgtaaatagtacacat 236  Q
    | ||||| |||||| |||||    
T  24992343 gctatgtgaatagtgcacat 24992362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 456 - 528
Target Start/End: Original strand, 40444451 - 40444523
Alignment:
Q  456 taccattatgcttaaaggagcagcaaagactgcaatgttaaaaatggcacaaatcaacccaacagcatgaaca 528  Q
    ||||||||| ||||||||||||||||| | | ||||||| ||||| | |||||||| ||| ||| | ||||||    
T  40444451 taccattatacttaaaggagcagcaaacattccaatgttgaaaatagtacaaatcatccccacaacttgaaca 40444523  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 41943370 - 41943302
Alignment:
Q  118 aatttgatatttcgaaattattcattgagacgaaatcgaataacatcttatatattaatatttgtcttta 187  Q
    ||||||||||||  ||| ||||||||||||| ||||| || ||||||||||||||||| |||||| ||||    
T  41943370 aatttgatattttaaaaatattcattgagac-aaatcaaacaacatcttatatattaacatttgtattta 41943302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 252
Target Start/End: Original strand, 43581037 - 43581130
Alignment:
Q  159 aacatcttatatattaatatttgtctttataaattattcaaaaatatgatcagaataggttatgtaaatagtacacatgatcaaattacgacat 252  Q
    ||||| |||||||  || ||||||||||||| |||| | ||||| || |||| | |||||||||| ||||||||| ||| ||||| | ||||||    
T  43581037 aacattttatataccaacatttgtctttatatattagtaaaaaaaattatcaaagtaggttatgtgaatagtacatatggtcaaactccgacat 43581130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 52167365 - 52167290
Alignment:
Q  118 aatttgatatttcgaaattattcattgagacgaaatcgaataacatcttatatattaatatttgtctttataaatta 194  Q
    ||||| |||||| |||  |||| |||||||| ||||| || ||||||||| |||||||||||||| |||||| ||||    
T  52167365 aatttaatattttgaatatattaattgagac-aaatcaaacaacatcttacatattaatatttgtatttatatatta 52167290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 26210902 - 26210827
Alignment:
Q  118 aatttgatatttcgaaattattcattgagacgaaatcgaataacatcttatatattaatatttgtctttataaatta 194  Q
    |||||||||||| |||| ||||||| |||||| |||| || ||||||||||||| ||   |||||||||||||||||    
T  26210902 aatttgatattttgaaaatattcatcgagacg-aatccaacaacatcttatataatatattttgtctttataaatta 26210827  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 189
Target Start/End: Complemental strand, 38292108 - 38292038
Alignment:
Q  118 aatttgatatttcgaaattattcattgagacgaaatcgaataacatcttatatattaatatttgtctttata 189  Q
    |||||||||||| |||| ||||||||||||| ||||| || ||||||||| || |||| |||||| ||||||    
T  38292108 aatttgatattttgaaaatattcattgagac-aaatcaaacaacatcttacatgttaacatttgtatttata 38292038  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 216981 - 217056
Alignment:
Q  118 aatttgatatttcgaaattattcattgagacgaaatcgaataacatcttatatattaatatttgtctttataaatta 194  Q
    ||||||| |||| |||| ||||||||||||| ||||| || ||||||||||||  ||| |||||| |||||| ||||    
T  216981 aatttgacattttgaaaatattcattgagac-aaatcaaacaacatcttatatgctaacatttgtatttatatatta 217056  T

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