View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0254_2D_low_22 (Length: 296)

Name: NF0254_2D_low_22
Description: NF0254_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0254_2D_low_22
NF0254_2D_low_22
[»] chr4 (2 HSPs)
chr4 (13-296)||(21386918-21387201)
chr4 (150-296)||(41231497-41231642)
[»] chr7 (2 HSPs)
chr7 (41-270)||(26385919-26386144)
chr7 (240-294)||(28534240-28534294)
[»] chr2 (5 HSPs)
chr2 (81-175)||(30966986-30967077)
chr2 (169-282)||(30598841-30598954)
chr2 (13-56)||(22885087-22885130)
chr2 (13-55)||(27740059-27740101)
chr2 (13-59)||(33788583-33788629)
[»] chr3 (2 HSPs)
chr3 (239-282)||(16266029-16266072)
chr3 (36-64)||(7104950-7104978)
[»] chr1 (3 HSPs)
chr1 (141-296)||(33383547-33383703)
chr1 (28-71)||(27905506-27905549)
chr1 (239-289)||(38544472-38544522)
[»] scaffold1613 (1 HSPs)
scaffold1613 (239-289)||(751-801)
[»] chr6 (2 HSPs)
chr6 (213-291)||(32150325-32150403)
chr6 (240-289)||(33968353-33968402)
[»] chr8 (1 HSPs)
chr8 (244-289)||(15906989-15907034)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 296
Target Start/End: Complemental strand, 21387201 - 21386918
Alignment:
Q  13 tttggtgttcattcagtggaccaaaggttgagaggtggtggaagctgtatgagtattagaatgggccctttttgggtgtggctcagctatggtgatgcga 112  Q
    |||||||||| |||||||||||  ||||||||| ||| |||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  21387201 tttggtgttcgttcagtggaccggaggttgagatgtgatggaagttgtatgaatattagaatgtgccctttttgggtgtggctcagctatggtgatgcga 21387102  T
Q  113 ccaaggtgttttgatttcaaggggtatattttttgggggtgagtagtagcgatgggtggttatggatatcatgttcaatggtggttcgcggtggagtatg 212  Q
    ||| ||||||||||||| ||||||| | ||||||||||||||||||| |||||||||||||||||||||||| ||||  |||||||||||||||||||||    
T  21387101 ccagggtgttttgatttaaaggggtgtgttttttgggggtgagtagtggcgatgggtggttatggatatcatattcagcggtggttcgcggtggagtatg 21387002  T
Q  213 atttaggaggtgaagtttatttgatcatgttgtcctcatgggcgttgaaggtagggtttggtttggtgttgtgtgtatgagtgt 296  Q
    |||||||||||||| |||||||| |  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21387001 atttaggaggtgaactttatttggtggtgttgtcctcatgggcgttgaaggtagggttttgtttggtgttgtgtgtatgagtgt 21386918  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 296
Target Start/End: Complemental strand, 41231642 - 41231497
Alignment:
Q  150 ggtgagtagtagcgatgggtggttatggatatcatgttcaatggtggttcgcggtggagtatgatttaggaggtgaagtttatttgatcatgttgtcctc 249  Q
    |||||||||| |||||||||||||||||| ||||| || | |||| ||| ||| |||||| || |||||||||||||| ||||||| |  ||||||||||    
T  41231642 ggtgagtagtggcgatgggtggttatgga-atcatttttagtggtagtttgcgatggagtctgttttaggaggtgaagattatttggtggtgttgtcctc 41231544  T
Q  250 atgggcgttgaaggtagggtttggtttggtgttgtgtgtatgagtgt 296  Q
    ||||| ||| ||||||||| |||||| ||||||| ||||||| ||||    
T  41231543 atgggtgttaaaggtagggcttggttaggtgttgggtgtatgggtgt 41231497  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 270
Target Start/End: Complemental strand, 26386144 - 26385919
Alignment:
Q  41 tgagaggtggtggaagctgtatgagtattagaatgggcccttttt-gggtgtggctcagctatggtgatgcgaccaaggtgttttgatttcaaggggtat 139  Q
    ||||||||||||||| |||  |||||||||| || || ||||||| ||||||| ||||||||||| |||||   |||| || ||||||||  ||||||      
T  26386144 tgagaggtggtggaaactgactgagtattagtataggaccttttttgggtgtgactcagctatggagatgcatacaagttg-tttgatttagaggggt-- 26386048  T
Q  140 attttttgggggtgagtagtagcgatgggtggttatggatatcatgttcaatggtggttcgcggtggagtatgatttaggaggtgaagtttatttgatca 239  Q
      ||||  | |||||||||| |||||| ||||||||||||||||| ||||  ||| ||||  | | |||| |  ||||||||| |||  ||||||| |      
T  26386047 -gttttgtgaggtgagtagtggcgatgagtggttatggatatcattttcagcggtagttcatgattgagt-tcgtttaggaggggaaacttatttggtgg 26385950  T
Q  240 tgttgtcctcatgggcgttgaaggtagggtt 270  Q
    |||| |||||||||| |||||||||||||||    
T  26385949 tgttttcctcatgggtgttgaaggtagggtt 26385919  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 28534294 - 28534240
Alignment:
Q  240 tgttgtcctcatgggcgttgaaggtagggtttggtttggtgttgtgtgtatgagt 294  Q
    ||||||||||| ||| |||||||||||||||||| | | ||||||||||| ||||    
T  28534294 tgttgtcctcaggggtgttgaaggtagggtttggctagttgttgtgtgtaggagt 28534240  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 175
Target Start/End: Complemental strand, 30967077 - 30966986
Alignment:
Q  81 tttttgggtgtggctcagctatggtgatgcgaccaaggtgttttgatttcaaggggtatattttttgggggtgagtagtagcgatgggtggttat 175  Q
    ||||||||||| ||||||||||||||||| || || ||||||| |||||  ||||||   |||||||||  ||||||||||||||||||||||||    
T  30967077 tttttgggtgtcgctcagctatggtgatgagaacatggtgttt-gatttagaggggtgatttttttggg--tgagtagtagcgatgggtggttat 30966986  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 282
Target Start/End: Complemental strand, 30598954 - 30598841
Alignment:
Q  169 tggttatggatatcatgttcaatggtggttcgcggtggagtatgatttaggaggtgaagtttatttgatcatgttgtcctcatgggcgttgaaggtaggg 268  Q
    |||||||||||||||  ||||  ||| ||| ||| ||| || |||||||| |||||||||||||||| |   |||||||||| ||| ||| || ||||||    
T  30598954 tggttatggatatcactttcagcggtagtttgcgatggtgtctgatttagaaggtgaagtttatttggtggggttgtcctcaagggtgttaaaagtaggg 30598855  T
Q  269 tttggtttggtgtt 282  Q
     |||||| ||||||    
T  30598854 attggttaggtgtt 30598841  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 22885130 - 22885087
Alignment:
Q  13 tttggtgttcattcagtggaccaaaggttgagaggtggtggaag 56  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||    
T  22885130 tttggtgttctttcggtggaccagaggttgagaggtggtggaag 22885087  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 27740059 - 27740101
Alignment:
Q  13 tttggtgttcattcagtggaccaaaggttgagaggtggtggaa 55  Q
    |||||||||| ||| |||||||| |||||||||||||||||||    
T  27740059 tttggtgttctttcggtggaccagaggttgagaggtggtggaa 27740101  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 33788629 - 33788583
Alignment:
Q  13 tttggtgttcattcagtggaccaaaggttgagaggtggtggaagctg 59  Q
    |||||||||| ||| ||| |||| |||||||||||||||||||||||    
T  33788629 tttggtgttctttcggtgaaccagaggttgagaggtggtggaagctg 33788583  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 16266029 - 16266072
Alignment:
Q  239 atgttgtcctcatgggcgttgaaggtagggtttggtttggtgtt 282  Q
    |||||||||||||||| |||||||||||||||||||| ||||||    
T  16266029 atgttgtcctcatgggtgttgaaggtagggtttggttaggtgtt 16266072  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 64
Target Start/End: Original strand, 7104950 - 7104978
Alignment:
Q  36 aaggttgagaggtggtggaagctgtatga 64  Q
    |||||||||||||||||||||||||||||    
T  7104950 aaggttgagaggtggtggaagctgtatga 7104978  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 296
Target Start/End: Complemental strand, 33383703 - 33383547
Alignment:
Q  141 ttttttgggggtgagtagtagcgatgggtggttatggatatcatgttcaatggtggttcgcggtggagtatgatttaggaggtgaagtttattt--gatc 238  Q
    |||||| |||||||||||| ||||||||||||||||||| || | | ||||||||||| |||   |||| ||||||  | |||||  |||||||  |       
T  33383703 tttttttggggtgagtagtggcgatgggtggttatggat-tcgtttccaatggtggtttgcgaaagagtctgattttagtggtgagatttattttggtgg 33383605  T
Q  239 atgttgtcctcatgggcgttgaaggtagggtttggtttggtgttgtgtgtatgagtgt 296  Q
     ||||||| ||||||| |||||| | || | |||||| ||||||||||||||||||||    
T  33383604 ttgttgtcgtcatgggtgttgaaagcagagcttggttaggtgttgtgtgtatgagtgt 33383547  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 27905506 - 27905549
Alignment:
Q  28 gtggaccaaaggttgagaggtggtggaagctgtatgagtattag 71  Q
    |||||||  ||||||||||||||||||||||||||||| |||||    
T  27905506 gtggaccggaggttgagaggtggtggaagctgtatgagcattag 27905549  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 38544522 - 38544472
Alignment:
Q  239 atgttgtcctcatgggcgttgaaggtagggtttggtttggtgttgtgtgta 289  Q
    |||||||||||||||| |||||||||| | ||||| | |||||||||||||    
T  38544522 atgttgtcctcatgggtgttgaaggtacgatttggctaggtgttgtgtgta 38544472  T

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Target: scaffold1613 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 801 - 751
Alignment:
Q  239 atgttgtcctcatgggcgttgaaggtagggtttggtttggtgttgtgtgta 289  Q
    |||||||||||||||| |||||||||| | ||||| | |||||||||||||    
T  801 atgttgtcctcatgggtgttgaaggtacgatttggctaggtgttgtgtgta 751  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 291
Target Start/End: Original strand, 32150325 - 32150403
Alignment:
Q  213 atttaggaggtgaagtttatttgatcatgttgtcctcatgggcgttgaaggtagggtttggtttggtgttgtgtgtatg 291  Q
    ||||||||| |||| ||||||||||  ||||||| || |||  ||||||||||||| || |||  ||||||||||||||    
T  32150325 atttaggagttgaaatttatttgatggtgttgtcttcgtggatgttgaaggtagggcttagttatgtgttgtgtgtatg 32150403  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 33968402 - 33968353
Alignment:
Q  240 tgttgtcctcatgggcgttgaaggtagggtttggtttggtgttgtgtgta 289  Q
    ||||||||||| ||| |||||||||||||||||| | |||| ||||||||    
T  33968402 tgttgtcctcaagggtgttgaaggtagggtttggctaggtgatgtgtgta 33968353  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 15906989 - 15907034
Alignment:
Q  244 gtcctcatgggcgttgaaggtagggtttggtttggtgttgtgtgta 289  Q
    ||||||||||| ||||||||||||||| || | |||||||||||||    
T  15906989 gtcctcatgggtgttgaaggtagggttgggctaggtgttgtgtgta 15907034  T

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