View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_2D_low_24 (Length: 276)
Name: NF0254_2D_low_24
Description: NF0254_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_2D_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 12802168 - 12801904
Alignment:
| Q |
1 |
ctatggtttagctagaagttctcaacttctcaagatattatgaataaatgagaagattgcaagacaaatccaaatggnnnnnnnn-------agtagact |
93 |
Q |
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| T |
12802168 |
ctatggtttagctagaagttctcaacttctcaagatattatgaataaatgagaagattgtcagacaaatccaaatggtttttttttttttttagtagact |
12802069 |
T |
|
| Q |
94 |
ctaatattatctatttagccgaaatcaattatataatatttcatttgtaaaaatgagtcagactaatggatagatctaaaagtttcaaattattcagtta |
193 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
12802068 |
ctaatattatctatttagtcgaaatcaattatataatatttcatttgtaaaaatgagtcagattaatggatagatctaaaagtttcaaattattcagtta |
12801969 |
T |
|
| Q |
194 |
caagattctacaattcttacaattatttttggctaagaacaaaatggaattcaatagtaattttt |
258 |
Q |
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| T |
12801968 |
caagattctacaattcttacaattaattttggctaagaacaaaatggaattcaatagtaattttt |
12801904 |
T |
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