View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0254_2D_low_3 (Length: 429)
Name: NF0254_2D_low_3
Description: NF0254_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_2D_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 2 - 412
Target Start/End: Complemental strand, 4775978 - 4775570
Alignment:
| Q |
2 |
caggtgcttatttaatttatattggccctaatattatctcttggtcatgcgagaagcaaccaacaattgcaaa-tcgtcaactgaagctgaatatcgtac |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4775978 |
caggtgcttatttaatttattttggccctaatattatctcttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgtac |
4775879 |
T |
|
| Q |
101 |
tatagcagccactactcaagaattaatatgggttcaaaacttgttacaagaacttcaaattccattaacggcaccaacaatattcttagaaaacattgga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| |
|
|
| T |
4775878 |
tatagcagccactactcaagaattaatatgggttcaaaacttgttacaagaacttcaaattccattaactgcaccaacaatattctaagacaacattgga |
4775779 |
T |
|
| Q |
201 |
gctacatctctatgtgcaaaccctgtctttcagtactctaggatgaagcatattgccatagattatcattttgttcgcgatctcgttgccgccaagaagc |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4775778 |
gctacatatctatgtgcaaaccctgtctttca---ctctaggatgaagcatattgccatagattatcattttgttcgcgatctcgttgccgccaagaagc |
4775682 |
T |
|
| Q |
301 |
ttcaagtttcacatgtcccaacaagtcatcaaccagtcgatcttctaacaaagccgttatcctcggtacggcatcacttccttaaagacaagattggagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4775681 |
ttcaagtttcacatgtcccaacaagtcatcaaccagtcgatcttctaacaaagccgttatcctcggtacggcatcacttccttaaagacaagattggagt |
4775582 |
T |
|
| Q |
401 |
tattgatgatac |
412 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4775581 |
tattgatgatac |
4775570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 2 - 412
Target Start/End: Complemental strand, 43061339 - 43060928
Alignment:
| Q |
2 |
caggtgcttatttaatttatattggccctaatattatctcttggtcatgcgagaagcaaccaacaattgcaaa-tcgtcaactgaagctgaatatcgtac |
100 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||| |||||| ||||||| || |||||||||||||||||||| || |
|
|
| T |
43061339 |
caggtgcttatttcatttattttggccctaatattatctcttggtcatgcaagaagcagccaacagttgcaaaatcatcaactgaagctgaatatcggac |
43061240 |
T |
|
| Q |
101 |
tatagcagccactactcaagaattaatatgggttcaaaacttgttacaagaacttcaaattccattaacggcaccaacaatattcttagaaaacattgga |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||| |||||| || |
|
|
| T |
43061239 |
tatagcagccactactcaggaattaatatgggttcaaaacttgttacaagaacttcaaattccattaactgcaccaacgatattctcagacaacattaga |
43061140 |
T |
|
| Q |
201 |
gctacatctctatgtgcaaaccctgtctttcagtactctaggatgaagcatattgccatagattatcattttgttcgcgatctcgt---tgccgccaaga |
297 |
Q |
| |
|
||||||| |||||||||||||||||| |||| ||| ||||||||| || |||||||||||||||||||||||| |||||||||| ||| ||||||| |
|
|
| T |
43061139 |
gctacatatctatgtgcaaaccctgtttttc---actataggatgaaacacattgccatagattatcattttgtttgcgatctcgttgctgctgccaaga |
43061043 |
T |
|
| Q |
298 |
agcttcaagtttcacatgtcccaacaagtcatcaaccagtcgatcttctaacaaagccgttatcctcggtacggcatcacttccttaaagacaagattgg |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | | ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
43061042 |
agcttcaagtttcacatgtcccaacaagtcatcagctacccgatcttctcacaaagccgttatcctcggtacgacatcacttccttaaagacaagattgg |
43060943 |
T |
|
| Q |
398 |
agttattgatgatac |
412 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
43060942 |
agttattgatgatac |
43060928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 45192874 - 45192914
Alignment:
| Q |
192 |
aacattggagctacatctctatgtgcaaaccctgtctttca |
232 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
45192874 |
aacattggagctacatatctatgtgcaaaccctgtccttca |
45192914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 637 times since January 2019
Visitors: 2568