View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0254_2D_low_35 (Length: 245)

Name: NF0254_2D_low_35
Description: NF0254_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0254_2D_low_35
NF0254_2D_low_35
[»] chr4 (12 HSPs)
chr4 (9-229)||(4025194-4025414)
chr4 (9-227)||(4009966-4010184)
chr4 (9-229)||(4002267-4002487)
chr4 (9-221)||(3801562-3801774)
chr4 (9-221)||(3954360-3954555)
chr4 (10-229)||(3809984-3810203)
chr4 (9-229)||(3986963-3987183)
chr4 (9-221)||(4218619-4218831)
chr4 (9-124)||(3817657-3817772)
chr4 (9-124)||(3919692-3919807)
chr4 (9-124)||(3932916-3933031)
chr4 (9-64)||(3963212-3963267)
[»] chr5 (1 HSPs)
chr5 (14-229)||(13397918-13398133)
[»] scaffold1360 (1 HSPs)
scaffold1360 (9-65)||(1911-1967)
[»] chr8 (2 HSPs)
chr8 (13-64)||(7069135-7069186)
chr8 (9-64)||(7075641-7075696)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 4025414 - 4025194
Alignment:
Q  9 gtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgtttttt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4025414 gtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgtttttt 4025315  T
Q  109 ggcaaaggtaagtgaagaattaggaagacatggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcacca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4025314 ggcaaaggtaagtgaagaattaggaagacatggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcacca 4025215  T
Q  209 aatgggttgtctagttatatt 229  Q
    |||||||||||||||||||||    
T  4025214 aatgggttgtctagttatatt 4025194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 9 - 227
Target Start/End: Complemental strand, 4010184 - 4009966
Alignment:
Q  9 gtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgtttttt 108  Q
    |||| |||||||||||||| |||||| |||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||    
T  4010184 gtgtcattggaatttggggcatgggaagtattggcaagacaactattgcaggagaaatttttaaccaaaattgctctgaatatgaaggttgttgtttttt 4010085  T
Q  109 ggcaaaggtaagtgaagaattaggaagacatggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcacca 208  Q
    || ||||||||| ||  |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||| |||    
T  4010084 ggaaaaggtaagcgagcaattaggaagacatggaagaacatttttgaaagaaaaacttttttctacactattagcagaagatgtgaaaatccgttcgcca 4009985  T
Q  209 aatgggttgtctagttata 227  Q
    ||||||||||||| |||||    
T  4009984 aatgggttgtctaattata 4009966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 4002487 - 4002267
Alignment:
Q  9 gtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgtttttt 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | || |||||||||||||||||||| |||||||||    
T  4002487 gtgtcattggaatttggggtatgggaggtattggcaagacaactattgctgaagaagtttttaaccgaagttgctctgaatatgaaggtttttgtttttt 4002388  T
Q  109 ggcaaaggtaagtgaagaattaggaagacatggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcacca 208  Q
    || ||||||||||||||||| |||||| ||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||  ||||||||    
T  4002387 ggaaaaggtaagtgaagaatcaggaaggcatggaataacatttttaaaagaaaagcttttttctacactattagcagaagatgtgaaaattaattcacca 4002288  T
Q  209 aatgggttgtctagttatatt 229  Q
    |||||| |||||| |||||||    
T  4002287 aatgggctgtctaattatatt 4002267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 3801774 - 3801562
Alignment:
Q  9 gtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgtttttt 108  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||| ||| ||||||||| |||||||||||| |    
T  3801774 gtgttattggaatttggggtatgggcggtattggcaagacaactattgcagaagaaatatttaaccaaaatcgctttgaatatgatggttgttgttttat 3801675  T
Q  109 ggcaaaggtaagtgaagaattaggaagacatggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcacca 208  Q
    | |||| || |||   ||||||||||| | |||||||||| |||  |||||||| ||||||||||  ||||||   ||||||||||||||||||||||||    
T  3801674 gtcaaatgtgagtttggaattaggaaggcgtggaataacaatttaaaaagaaaagcttttttctaacctattaaatgaagatgtgaaaatcgattcacca 3801575  T
Q  209 aatgggttgtcta 221  Q
    |||||||||||||    
T  3801574 aatgggttgtcta 3801562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 3954360 - 3954555
Alignment:
Q  9 gtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgtttttt 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||| | || ||||||||||||||||||||||||||||||    
T  3954360 gtgtcattggaatttggggtatgggaggtattggcaagacaactattgctgaagaagtttataaccgaagttgctctgaatatgaaggttgttgtttttt 3954459  T
Q  109 ggcaaaggtaagtgaagaattaggaagacatggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcacca 208  Q
    ||||||||| ||||| ||||||||||| || |                 ||| | |||||||| | ||||||||||||||||||||||||||||||||||    
T  3954460 ggcaaaggtgagtgacgaattaggaaggcacg-----------------gaacagcttttttcaacactattagcagaagatgtgaaaatcgattcacca 3954542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 3810203 - 3809984
Alignment:
Q  10 tgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgttttttg 109  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||  ||||| | ||| | |||| ||| ||||||||||| ||||||||||| |||    
T  3810203 tgttatcggaatttggggtatgggtggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgttgtttcttg 3810104  T
Q  110 gcaaaggtaagtgaagaattaggaagacatggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcaccaa 209  Q
    | ||||||||||||||| |||  ||||||||||||    | ||| ||| | ||||||||||||| |||||| ||||||||||||||||| ||| ||||||    
T  3810103 gaaaaggtaagtgaagagttaacaagacatggaatggattctttaaaaaataaacttttttctaaactattggcagaagatgtgaaaattgatacaccaa 3810004  T
Q  210 atgggttgtctagttatatt 229  Q
    || ||||| ||||| |||||    
T  3810003 attggttgcctagtgatatt 3809984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 3987183 - 3986963
Alignment:
Q  9 gtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgtttttt 108  Q
    |||| ||||||||||||||||||   || |||||||||||||||||||| |||||||||||||| |||||| ||||||||||||| ||||||||||||||    
T  3987183 gtgtgattggaatttggggtatgcctggcattggcaagacaactattgcagaagaaatttttaaccaaaatcgctctgaatatgatggttgttgtttttt 3987084  T
Q  109 ggcaaaggtaagtgaagaattaggaagacatggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcacca 208  Q
    ||||||||| |||||| | |||  |  ||||||||||  || ||| |||||||  |||||| ||| | |||| || |||||||||||||| ||| |||||    
T  3987083 ggcaaaggtgagtgaaaagttaaaattacatggaatagaatctttaaaagaaaccctttttactaaaatattggccgaagatgtgaaaattgatacacca 3986984  T
Q  209 aatgggttgtctagttatatt 229  Q
    ||| ||||||| ||| |||||    
T  3986983 aataggttgtccagtgatatt 3986963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 4218831 - 4218619
Alignment:
Q  9 gtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgtttttt 108  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||  ||||| | ||| | |||| ||| ||||||||||| |||||||||||| |    
T  4218831 gtgttattggaatttggggtatgggcggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgttgttttat 4218732  T
Q  109 ggcaaaggtaagtgaagaattaggaagacatggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcacca 208  Q
    | |||| || |||   | ||||  ||| | ||||||||||||||| |||||||  ||||||||||  ||||||   ||||||||||||||||||||| ||    
T  4218731 gtcaaatgtgagtttgggattacaaagtcgtggaataacatttttaaaagaaatgcttttttctaacctattaaatgaagatgtgaaaatcgattcatca 4218632  T
Q  209 aatgggttgtcta 221  Q
    |||||||||||||    
T  4218631 aatgggttgtcta 4218619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 3817772 - 3817657
Alignment:
Q  9 gtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgtttttt 108  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||  |||||| | || || ||||| ||||||||||| ||    
T  3817772 gtgttattggaatttggggcatgggcggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttctt 3817673  T
Q  109 ggcaaaggtaagtgaa 124  Q
    || |||||| ||||||    
T  3817672 ggaaaaggtcagtgaa 3817657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 3919692 - 3919807
Alignment:
Q  9 gtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgtttttt 108  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||  |||||| | || || ||||| ||||||||||| ||    
T  3919692 gtgttattggaatttggggcatgggcggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttctt 3919791  T
Q  109 ggcaaaggtaagtgaa 124  Q
    || |||||| ||||||    
T  3919792 ggaaaaggtcagtgaa 3919807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 3932916 - 3933031
Alignment:
Q  9 gtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgtttttt 108  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||  |||||| | || || ||||| ||||||||||| ||    
T  3932916 gtgttattggaatttggggcatgggcggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttctt 3933015  T
Q  109 ggcaaaggtaagtgaa 124  Q
    || |||||| ||||||    
T  3933016 ggaaaaggtcagtgaa 3933031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 3963212 - 3963267
Alignment:
Q  9 gtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaa 64  Q
    ||||| |||| |||||||||||||| |||||||||||||||||  |||| ||||||    
T  3963212 gtgttgttgggatttggggtatgggtggtattggcaagacaacccttgcagaagaa 3963267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 13398133 - 13397918
Alignment:
Q  14 attggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgttttttggcaa 113  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||| |||||||||||||| ||||||||||||||||    
T  13398133 attggtatttggggtatgggaggtattggaaagacaactattgccgaagaaatttttaatcaaatttgttctgaatatgaaggatgttgttttttggcaa 13398034  T
Q  114 aggtaagtgaagaattaggaagacatggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcaccaaatgg 213  Q
    |||| ||||||||||||||||| ||||||||| | ||||| |||||||| ||| |||||| |||||||||||||||||| |||||||||||| |||||||    
T  13398033 aggtgagtgaagaattaggaaggcatggaatagcgtttttaaaagaaaagcttgtttctacactattagcagaagatgtaaaaatcgattcatcaaatgg 13397934  T
Q  214 gttgtctagttatatt 229  Q
    |||| |||||||||||    
T  13397933 gttgcctagttatatt 13397918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1360 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold1360
Description:

Target: scaffold1360; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 1911 - 1967
Alignment:
Q  9 gtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaa 65  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||    
T  1911 gtgttattggaatttggggcatgggcggtattggcaagacaactattgcagaagaaa 1967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 7069186 - 7069135
Alignment:
Q  13 tattggaatttggggtatgggaggtattggcaagacaactattgccgaagaa 64  Q
    ||||||||||||||||||| | |||||||| |||||||||||||| ||||||    
T  7069186 tattggaatttggggtatgagtggtattggaaagacaactattgcagaagaa 7069135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 7075696 - 7075641
Alignment:
Q  9 gtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaa 64  Q
    ||||| |||||||||||||||||  ||||||||| || ||||||||||| ||||||    
T  7075696 gtgttcttggaatttggggtatgccaggtattggtaaaacaactattgctgaagaa 7075641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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