View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_2D_low_36 (Length: 242)
Name: NF0254_2D_low_36
Description: NF0254_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_2D_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 32683637 - 32683419
Alignment:
| Q |
1 |
acgcatagacaagatttgcgagcttggaacttcccaagtgtctatctaacactcacaacttaaggataaaacagaacatagttcagttttcctttcttac |
100 |
Q |
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| T |
32683637 |
acgcatagacaagatttgcgagcttggcacttcccaagtgtcta----aaactcacaacttaaggataaaacagaacatagttcagttttcctttcttac |
32683542 |
T |
|
| Q |
101 |
cctacacaactgcctaattttatttacagccttcaacatcctttatttgaatttcggcttttggatttctttcatcttaagcttcattctcctgctggtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32683541 |
tctacacaactgcctaattttatttacagccttcaacatcctttatttgaacttcggcttttgga-atctttcatcttaagcttcattctcctgctggtt |
32683443 |
T |
|
| Q |
201 |
tggaacttcagctgccttagatgt |
224 |
Q |
| |
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|||||||| ||||||||||||||| |
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| T |
32683442 |
tggaacttgagctgccttagatgt |
32683419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 32685347 - 32685129
Alignment:
| Q |
1 |
acgcatagacaagatttgcgagcttggaacttcccaagtgtctatctaacactcacaacttaaggataaaacagaacatagttcagttttcctttcttac |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32685347 |
acgcatagacaagatttgcgagcttggcacttcccaagtgtcta----aaactcacaacttaaggataaaacagaacatagttcagttttcctttcttac |
32685252 |
T |
|
| Q |
101 |
cctacacaactgcctaattttatttacagccttcaacatcctttatttgaatttcggcttttggatttctttcatcttaagcttcattctcctgctggtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32685251 |
tatacacaactgcctaattttatttacagccttcaacatcctttatttgaacttcggcttttgga-atctttcatcttaagcttcattctcctgctggtt |
32685153 |
T |
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| Q |
201 |
tggaacttcagctgccttagatgt |
224 |
Q |
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|||||||| ||||||||||||||| |
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| T |
32685152 |
tggaacttgagctgccttagatgt |
32685129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 33010680 - 33010824
Alignment:
| Q |
1 |
acgcatagac-aagatttgcgagcttggaacttcccaagtgtctatctaacactcacaacttaaggataaaacagaacatagttcagttttcctttctta |
99 |
Q |
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|||||||||| ||||||||| ||||||| |||||||||| ||||||| |||||||| |||||||||| |||||||||||| ||| | ||||||| |
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| T |
33010680 |
acgcatagaccaagatttgcaagcttggctcttcccaagtatctatct------cacaacttgaggataaaacggaacatagttcaatttccttttctta |
33010773 |
T |
|
| Q |
100 |
ccctacacaactgcctaattttatttacagccttcaacatcctttatttgaa |
151 |
Q |
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| | |||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
33010774 |
ctccacacaactgcttaattttatttaca-ccttcaacatcctttatttgaa |
33010824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 33010870 - 33010932
Alignment:
| Q |
162 |
tggatttctttcatcttaagcttcattctcctgctggtttggaacttcagctgccttagatgt |
224 |
Q |
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| T |
33010870 |
tggatgtctttcatcttaagcttcgtactcctgctggtttggaacttcagctgccttagatgt |
33010932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 33011259 - 33011205
Alignment:
| Q |
159 |
ttttggatttctttcatcttaagcttcattctcctgctggtttggaacttcagct |
213 |
Q |
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||||||||||||||| |||||| |||| ||||||||||||||||||||||||||| |
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| T |
33011259 |
ttttggatttctttcttcttaatcttcgttctcctgctggtttggaacttcagct |
33011205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 28734811 - 28734759
Alignment:
| Q |
159 |
ttttggatttctttcatcttaagcttcattctcctgctggtttggaacttcag |
211 |
Q |
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|||||||| | ||||||| ||||||||| ||| |||||||||||||||||||| |
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| T |
28734811 |
ttttggatgtttttcatcataagcttcaatcttctgctggtttggaacttcag |
28734759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 28711423 - 28711376
Alignment:
| Q |
170 |
tttcatcttaagcttcattctcctgctggtttggaacttcagctgcct |
217 |
Q |
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|||||| |||||||||| ||||||| |||||||||||||||| ||||| |
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| T |
28711423 |
tttcatgttaagcttcaatctcctgttggtttggaacttcaggtgcct |
28711376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 28711300 - 28711262
Alignment:
| Q |
179 |
aagcttcattctcctgctggtttggaacttcagctgcct |
217 |
Q |
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|||||||| |||||||||||||||||||||||| ||||| |
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| T |
28711300 |
aagcttcaatctcctgctggtttggaacttcaggtgcct |
28711262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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