View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_2D_low_4 (Length: 429)
Name: NF0254_2D_low_4
Description: NF0254_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_2D_low_4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 1856102 - 1855813
Alignment:
| Q |
18 |
aatacattgatgaatcccaattcacttcgatgaatcactaaatcactagtttaaaacgagtcacataattaagagaaaccaaattcaataaaacattgaa |
117 |
Q |
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| T |
1856102 |
aatacattgatgaatcccaattcacttcgatgaatcactaaatcactagtttaaaacgagtcacataattaagagaaaccaaattcaataaaacattgaa |
1856003 |
T |
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| Q |
118 |
gatatgaagcattatcaattaattaaactacaaaag--nnnnnnnnnctgtgatttacaatcatgatatgt--ttgttacctctacagcctccgggaacg |
213 |
Q |
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| T |
1856002 |
gatatgaagcattatcaattaattaaactacaaaagaaaaagaaaaactgtgatttacaatcatgatatgtacttgttacctctacagcctccgggaacg |
1855903 |
T |
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| Q |
214 |
tatggatttccttcaaaacctgccaaacacttgcatctgtaaccgtcataatctgaatctttatcaacacattcgctattttccttgcag |
303 |
Q |
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| T |
1855902 |
tatggatttccttcaaaacctgccaaacacttgcatctgtaaccgtcataatctgaatctttatcaacacattcactattttccttgcag |
1855813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 84 - 303
Target Start/End: Original strand, 1817162 - 1817378
Alignment:
| Q |
84 |
aattaagagaaaccaaattcaataaaacattgaagatatgaagcattatcaattaattaaactacaaaagnnnnnnnnnctgtgatttacaatcatgata |
183 |
Q |
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| T |
1817162 |
aattaagaggaaccaaattcaataaaacattgaaaatatgaagcacaatcaattaattaaactgcaaaa---acaaaaacagtggtacgatattatgctt |
1817258 |
T |
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| Q |
184 |
tgtttgttacctctacagcctccgggaacgtatggatttccttcaaaacctgccaaacacttgcatctgtaaccgtcataatctgaatctttatcaacac |
283 |
Q |
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| T |
1817259 |
tgtttgttacctgtgcagcctccaggaaggtatggatttccttcaaaaccttgtaaacacttgcatctgtaaccatcataatctggatcgtcatcgacac |
1817358 |
T |
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| Q |
284 |
attcgctattttccttgcag |
303 |
Q |
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| T |
1817359 |
attcactatttttcttgcag |
1817378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 293 - 429
Target Start/End: Original strand, 39763367 - 39763503
Alignment:
| Q |
293 |
tttccttgcagatcactccaatcatcagtctcatcataaaagttcaagtgcttattcttcattacattattgttgtaattgttgtccatagacatcgatc |
392 |
Q |
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| T |
39763367 |
tttccttgcagatcactccaatcatcagtctcatcataaaagttcaagtgcttattcttcatcacattattgttgtaattgttgtccatagacatcgatc |
39763466 |
T |
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| Q |
393 |
tctcagcgatctttccgttgttccctgctgaaaacat |
429 |
Q |
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| T |
39763467 |
tctcagcgatctttccgttgttccctgctgaaaacat |
39763503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 429
Target Start/End: Original strand, 39746384 - 39746457
Alignment:
| Q |
356 |
acattattgttgtaattgttgtccatagacatcgatctctcagcgatctttccgttgttccctgctgaaaacat |
429 |
Q |
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| T |
39746384 |
acattgttcttgtagttgttgtccgtagacatcaatctctgagcgatctttccattgatcgctgccgaaaacat |
39746457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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