View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_2D_low_43 (Length: 222)
Name: NF0254_2D_low_43
Description: NF0254_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_2D_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 44760540 - 44760751
Alignment:
| Q |
1 |
ttatattaatcttgcatgtaacaggcagatatagataataatgggacacttgactatggcgaattcattgctgctactgtgcacttaaataagctggaga |
100 |
Q |
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| T |
44760540 |
ttatattaatcttgcatgtaacaggcagatatagataataacgggacacttgactatggcgaattcattgctgctactgtgcacttaaataagctggaga |
44760639 |
T |
|
| Q |
101 |
gagaggaaaatctgttgtcggcattctcctactttgacaaagattgtagcggttacataaccatcgacgagattcaagcagcttgtaaagagtttggctt |
200 |
Q |
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| T |
44760640 |
gagaggaaaatctgttgtcggcattctcctactttgacaaagattgtagcggttacataaccatcgatgagattcaagcagcctgtaaagagtttggctt |
44760739 |
T |
|
| Q |
201 |
agatgatgtcca |
212 |
Q |
| |
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|||||||||||| |
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| T |
44760740 |
agatgatgtcca |
44760751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 44769674 - 44769875
Alignment:
| Q |
12 |
ttgcatgtaacaggcagatatagataataatgggacacttgactatggcgaattcattgctgctactgtgcacttaaataagctggagagagaggaaaat |
111 |
Q |
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| T |
44769674 |
ttgcatgtgacaggcagacattgataataacgggacacttgactatggtgaattcattgctgctactgtccacttaaataagctggagagagaggaaaat |
44769773 |
T |
|
| Q |
112 |
ctgttgtcggcattctcctactttgacaaagattgtagcggttacataaccatcgacgagattcaagcagcttgtaaagagtttggcttagatgatgtcc |
211 |
Q |
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| T |
44769774 |
ctattgtcagcattctcgtactttgacaaagatggaagtggttacataaccattgacgagatacaggcagcttgtaaggagtttggtttggacgatgtcc |
44769873 |
T |
|
| Q |
212 |
at |
213 |
Q |
| |
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|| |
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| T |
44769874 |
at |
44769875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 39943769 - 39943961
Alignment:
| Q |
21 |
acaggcagatatagataataatgggacacttgactatggcgaattcattgctgctactgtgcacttaaataagctggagagagaggaaaatctgttgtcg |
120 |
Q |
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|||||| ||| | ||||| | ||||||| |||||||||| |||||||||||||| ||||| || |||||||||||||||||||||||||| |||||||| |
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| T |
39943769 |
acaggcggatgttgataaaagtgggacaattgactatggtgaattcattgctgcaactgttcatttaaataagctggagagagaggaaaacctgttgtca |
39943868 |
T |
|
| Q |
121 |
gcattctcctactttgacaaagattgtagcggttacataaccatcgacgagattcaagcagcttgtaaagagtttggcttagatgatgtccat |
213 |
Q |
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| T |
39943869 |
gccttcgcttattttgacaaagatgctagtggttacataaccattgatgagatttcacaagcttgtaaggactttggtttagatgatatccat |
39943961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 198
Target Start/End: Complemental strand, 43463031 - 43462855
Alignment:
| Q |
22 |
caggcagatatagataataatgggacacttgactatggcgaattcattgctgctactgtgcacttaaataagctggagagagaggaaaatctgttgtcgg |
121 |
Q |
| |
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||||| |||||||| || ||||| ||| | |||||||| ||||| | || ||||| ||||||| |||||| |||| |||||||| || || | | | |
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| T |
43463031 |
caggctgatatagacaacaatggaacaatagactatggtgaatttctcgcggctacactgcacttgaataagatggaaagagaggagaacttggttgcag |
43462932 |
T |
|
| Q |
122 |
cattctcctactttgacaaagattgtagcggttacataaccatcgacgagattcaagcagcttgtaaagagtttggc |
198 |
Q |
| |
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| || |||| ||||||||||| ||||||||||||| ||||| |||||| ||||| |||||| ||||| |||||| |
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| T |
43462931 |
cttttgcctattttgacaaagacggtagcggttacatcaccattgacgagcttcaacaagcttgcaaagactttggc |
43462855 |
T |
|
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