View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_2D_low_47 (Length: 216)
Name: NF0254_2D_low_47
Description: NF0254_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_2D_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 56492429 - 56492219
Alignment:
| Q |
1 |
ctttgttgctgctgtttcgcgccacaaccccacctttcctaatcctcccattactatgactatgatgatcatcatcatcaattcttgaacagtatcttct |
100 |
Q |
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| T |
56492429 |
ctttgttgctgctgtttcgcaccacaaccccacctttcctaatcctcccattactatgactatgatgatgatcatcatcaattcttgaacagtattttct |
56492330 |
T |
|
| Q |
101 |
cactctcattacattacaaggaaacacaccaacacttacacccctcatcgcattcatggcatggcatagcatggaaaccaaacaccaaatcaaatattat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56492329 |
cactctcattacattacaaggaaacacaccaacacttacacccctcatcgcattcatggcatggcatagcatggaaaccaaacaccaaatcaaatattat |
56492230 |
T |
|
| Q |
201 |
gttgttgtttc |
211 |
Q |
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||||||||||| |
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| T |
56492229 |
gttgttgtttc |
56492219 |
T |
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