View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0254_2D_low_48 (Length: 216)
Name: NF0254_2D_low_48
Description: NF0254_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0254_2D_low_48
Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 56492429 - 56492219
Alignment:
Q
1
ctttgttgctgctgtttcgcgccacaaccccacctttcctaatcctcccattactatgactatgatgatcatcatcatcaattcttgaacagtatcttct
100
Q
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
T
56492429
ctttgttgctgctgtttcgcaccacaaccccacctttcctaatcctcccattactatgactatgatgatgatcatcatcaattcttgaacagtattttct
56492330
T
Q
101
cactctcattacattacaaggaaacacaccaacacttacacccctcatcgcattcatggcatggcatagcatggaaaccaaacaccaaatcaaatattat
200
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
56492329
cactctcattacattacaaggaaacacaccaacacttacacccctcatcgcattcatggcatggcatagcatggaaaccaaacaccaaatcaaatattat
56492230
T
Q
201
gttgttgtttc
211
Q
|||||||||||
T
56492229
gttgttgtttc
56492219
T
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