View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0254_2D_low_9 (Length: 366)

Name: NF0254_2D_low_9
Description: NF0254_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0254_2D_low_9
NF0254_2D_low_9
[»] chr3 (6 HSPs)
chr3 (11-354)||(36677102-36677446)
chr3 (11-354)||(36687184-36687528)
chr3 (225-347)||(36665304-36665431)
chr3 (61-143)||(36664849-36664931)
chr3 (64-140)||(36704362-36704438)
chr3 (145-181)||(36664986-36665022)


Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 11 - 354
Target Start/End: Complemental strand, 36677446 - 36677102
Alignment:
Q  11 atggacatcaaactcctccaacatatgacatttctgaattccctctttctctagtggtgttgttgaaggataattatgcacatgtagatttcattgcggc 110  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36677446 atggacatcaaactcctccaacatatgacatttccgaactccctctttctctagtggtgttgttgaaggataattatgcacatgtagatttcattgcggc 36677347  T
Q  111 tatcaatgctaaacaagtcgtttatgatcctattattttacaattattattgtgcttcaaatatatctactatctatctattaataatatcggtcttgtt 210  Q
    | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36677346 tgtcaatgctaaacaagtcgtttatgatcctatgattttacaattattattgtgcttcaaatatatctactatctatctattaataatatcggtcttgtt 36677247  T
Q  211 aacccgtgcacccagttagttgttattatgtttaagtaaattgtataaggaatcttagattttgggtgctttt-aagatgatatttcaagttacgattcg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  36677246 aacccgtgcacccagttagttgttattatgtttaagtaaattgtataaggaatcttagattttgggtgcttttaaagatgatatttcaagttacgattcg 36677147  T
Q  310 caaatgatgtaatgtaatggaaaattcaaatgaataagtgatgtc 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  36677146 caaatgatgtaatgtaatggaaaattcaaatgaataagtgatgtc 36677102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 11 - 354
Target Start/End: Complemental strand, 36687528 - 36687184
Alignment:
Q  11 atggacatcaaactcctccaacatatgacatttctgaattccctctttctctagtggtgttgttgaaggataattatgcacatgtagatttcattgcggc 110  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36687528 atggacatcaaactcctccaacatatgacatttccgaactccctctttctctagtggtgttgttgaaggataattatgcacatgtagatttcattgcggc 36687429  T
Q  111 tatcaatgctaaacaagtcgtttatgatcctattattttacaattattattgtgcttcaaatatatctactatctatctattaataatatcggtcttgtt 210  Q
    | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36687428 tgtcaatgctaaacaagtcgtttatgatcctatgattttacaattattattgtgcttcaaatatatctactatctatctattaataatatcggtcttgtt 36687329  T
Q  211 aacccgtgcacccagttagttgttattatgtttaagtaaattgtataaggaatcttagattttgggtgctttt-aagatgatatttcaagttacgattcg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  36687328 aacccgtgcacccagttagttgttattatgtttaagtaaattgtataaggaatcttagattttgggtgcttttaaagatgatatttcaagttacgattcg 36687229  T
Q  310 caaatgatgtaatgtaatggaaaattcaaatgaataagtgatgtc 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  36687228 caaatgatgtaatgtaatggaaaattcaaatgaataagtgatgtc 36687184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 225 - 347
Target Start/End: Original strand, 36665304 - 36665431
Alignment:
Q  225 gttagttgttattatgtttaagtaaattgtataaggaatcttagattttgggtgctt-ttaagatgatatttcaagttacgattcgcaa--atg--atgt 319  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||| |||||| | ||||| ||||||||||| ||||||| |||  |||  ||||    
T  36665304 gttagtggttattatgtttaagtaaattgtatatggaatcttagattttgagtgcttctaaagatcatatttcaagtcacgattcacaatgatgtaatgt 36665403  T
Q  320 aatgtaatggaaaattcaaatgaataag 347  Q
    ||||||||||||||||||||||||||||    
T  36665404 aatgtaatggaaaattcaaatgaataag 36665431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 36664849 - 36664931
Alignment:
Q  61 ctagtggtgttgttgaaggataattatgcacatgtagatttcattgcggctatcaatgctaaacaagtcgtttatgatcctat 143  Q
    |||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||    
T  36664849 ctagtggtgtcgttgaacgataattatgcacatttagatttcattgcggctatcaatgctaaacaactcatttatgatcctat 36664931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 36704438 - 36704362
Alignment:
Q  64 gtggtgttgttgaaggataattatgcacatgtagatttcattgcggctatcaatgctaaacaagtcgtttatgatcc 140  Q
    ||||| ||||| |||||| ||||||||||||  ||||| || |||| |  |||||||||||||||||||||||||||    
T  36704438 gtggtattgttcaaggatgattatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcc 36704362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 36664986 - 36665022
Alignment:
Q  145 attttacaattattattgtgcttcaaatatatctact 181  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  36664986 attttacaactattattgtgcttcgaatatatctact 36665022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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