View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_high_18 (Length: 232)
Name: NF0254_high_18
Description: NF0254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 7278929 - 7279113
Alignment:
| Q |
1 |
ccatttgaatttgatcaacaaattcttgcagaactatagcccttttgataatcgactttctcaagtccctaagagcagaacaatggaagactctaacaga |
100 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
7278929 |
ccatttgaatttgatcaacaaattcttgaagaacaatagcccttttgataatcgactttctcaagtccctaagagcagaacaatgaaatactctaacaga |
7279028 |
T |
|
| Q |
101 |
atccaacctaagaagcaaattcatgattgtttcagcgatccttatcctctctttttgctcatttttcatcatcttcacaggttct |
185 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
7279029 |
atccaacctaagaagcaaattcataattgtttcagcgatccttatcctctctttttgctcctttttcatcatcttcacagtttct |
7279113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 7374910 - 7374726
Alignment:
| Q |
1 |
ccatttgaatttgatcaacaaattcttgcagaactatagcccttttgataatcgactttctcaagtccctaagagcagaacaatggaagactctaacaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
7374910 |
ccatttgaatttgatcaacaaattcttgaagaacaatagcccttttgataatcgactttctcaagtccctaagagcagaacaatgaaatactctaacaga |
7374811 |
T |
|
| Q |
101 |
atccaacctaagaagcaaattcatgattgtttcagcgatccttatcctctctttttgctcatttttcatcatcttcacaggttct |
185 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
7374810 |
atccaacctaagaagcaaattcataattgtttcagcgatccttatcctctctttttgctcctttttcatcatcttcacagtttct |
7374726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 5848215 - 5848125
Alignment:
| Q |
94 |
taacagaatccaacctaagaagcaaattcatgattgtttcagcgatccttatcctctctttttgctcatttttcatcatcttcacaggttct |
185 |
Q |
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|
|||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
5848215 |
taacagaatccaacctaagaagcaaattcatgatggttttagtgatccttatcctctctttttgctc-cttttcatcatcttcacagtttct |
5848125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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