View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_high_7 (Length: 414)
Name: NF0254_high_7
Description: NF0254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_high_7 |
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| [»] scaffold0024 (2 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 356
Target Start/End: Original strand, 30494 - 30836
Alignment:
| Q |
2 |
ttttttcttatcttatcatctctaattagcttccattgaattacataacgccataaaggtgttagctta--gtgataagagtttaacgacaaagttctct |
99 |
Q |
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| T |
30494 |
ttttttcttatcttatcatctctaattagcttccattgaattacataatgccataa-ggtgttagcttaacgtcataacc-tcaagagataaagttctct |
30591 |
T |
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| Q |
100 |
cagggtcggctgtaaaatagtcattagtgtttttctactaataatagttatgactagtttatgctgaaatatctatttattggtttgtggtcaggtgtcc |
199 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30592 |
cagggtcgattgtaaaatagtcattagtgtttttttactaataatagttatgactagtt-atgctgaaatatctatttattggtttgtggtcaggtgtct |
30690 |
T |
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| Q |
200 |
tgtggaggtactcattctgttgcattatcccgagatgggcgcatattttctgtaagtagtttgctcaccatctcaattttcattctgttgcattattggt |
299 |
Q |
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| T |
30691 |
tgtggaggtactcattctgttgcattaacccgagatgggcgcatattttctgtaagtagtttgctcaccatctcaattttctttgc----cat-----gt |
30781 |
T |
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| Q |
300 |
tttgtttaatcttaaataaaagtcacaccaaatcttgatatcccctttatatattga |
356 |
Q |
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| T |
30782 |
tttgtttaatctgaaataaaagt--caccaaaatttgatattccctttatatattga |
30836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 242 - 386
Target Start/End: Original strand, 65702 - 65842
Alignment:
| Q |
242 |
atattttctgtaagtagtttgctcaccatctcaattttcattctgttgcattattggttttgtttaatcttaaataaaagtcacaccaaatcttgatatc |
341 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
65702 |
atattttctgtaagtagttt----accatctcaattttcattctgttgcattattggttttgtttaatcttaaataaaagtcacaccaaatcttgatatc |
65797 |
T |
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| Q |
342 |
ccctttatatattgaattattgatattatagattagtagcaattt |
386 |
Q |
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| T |
65798 |
ccctttatatattgaattattgatattatagattagtagcaattt |
65842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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