View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0254_low_10 (Length: 336)

Name: NF0254_low_10
Description: NF0254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0254_low_10
NF0254_low_10
[»] scaffold0049 (1 HSPs)
scaffold0049 (84-237)||(58322-58475)


Alignment Details
Target: scaffold0049 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 84 - 237
Target Start/End: Original strand, 58322 - 58475
Alignment:
Q  84 tagctgttgcttcaagcctaagctgcatctgcttactaattctgggatttggctttcttctctggtggagacaaagatataacaagcaaatattctttga 183  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  58322 tagcttttgcttcaagcctaagctgcatctgcttactaattctgggatttggctttcttctctggtggagacaaagatataacaagcaaatattctttga 58421  T
Q  184 cacgaatggttagttagtcattgaatcaaatcgaactacagcataggctaatat 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  58422 cacgaatggttagttagtcattgaatcaaatcgaactacagcataggctaatat 58475  T

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