View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_low_11 (Length: 336)
Name: NF0254_low_11
Description: NF0254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 126; Significance: 6e-65; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 7278929 - 7279074
Alignment:
| Q |
1 |
ccatttgaatttgatcaacaaattcttgcagaactatagcccttttgataatcgactttctcaagtccctaagagcagaacaatggaagactctaacaga |
100 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
7278929 |
ccatttgaatttgatcaacaaattcttgaagaacaatagcccttttgataatcgactttctcaagtccctaagagcagaacaatgaaatactctaacaga |
7279028 |
T |
|
| Q |
101 |
atccaacctaagaagcaaattcatgattgtttcagcgatccttatc |
146 |
Q |
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| T |
7279029 |
atccaacctaagaagcaaattcataattgtttcagcgatccttatc |
7279074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 7374910 - 7374765
Alignment:
| Q |
1 |
ccatttgaatttgatcaacaaattcttgcagaactatagcccttttgataatcgactttctcaagtccctaagagcagaacaatggaagactctaacaga |
100 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
7374910 |
ccatttgaatttgatcaacaaattcttgaagaacaatagcccttttgataatcgactttctcaagtccctaagagcagaacaatgaaatactctaacaga |
7374811 |
T |
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| Q |
101 |
atccaacctaagaagcaaattcatgattgtttcagcgatccttatc |
146 |
Q |
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| T |
7374810 |
atccaacctaagaagcaaattcataattgtttcagcgatccttatc |
7374765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 215 - 318
Target Start/End: Original strand, 7279143 - 7279246
Alignment:
| Q |
215 |
caactccactttcatcttcaaaatcttgttcaaactcgtcctcacaagaaaccctcttgcaaccttctcaatcttcgttgctgaatcggctctgtttctc |
314 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
7279143 |
caactccactttcatcttcaacatcttgttcaaactcttcctcacaagaaaccctcttgcaaccttctcaatcttcgttgctgaattggctttgtttctc |
7279242 |
T |
|
| Q |
315 |
tctg |
318 |
Q |
| |
|
|||| |
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| T |
7279243 |
tctg |
7279246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 215 - 318
Target Start/End: Complemental strand, 7374696 - 7374593
Alignment:
| Q |
215 |
caactccactttcatcttcaaaatcttgttcaaactcgtcctcacaagaaaccctcttgcaaccttctcaatcttcgttgctgaatcggctctgtttctc |
314 |
Q |
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|||||| || ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
7374696 |
caactctaccttcatcttcaacatcttgttcaaactcttcctcacaagaaaccctcttgcaaccttctcaatcttcgttgctgaattggctttgtttctc |
7374597 |
T |
|
| Q |
315 |
tctg |
318 |
Q |
| |
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|||| |
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| T |
7374596 |
tctg |
7374593 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 218 - 318
Target Start/End: Complemental strand, 5848103 - 5848003
Alignment:
| Q |
218 |
ctccactttcatcttcaaaatcttgttcaaactcgtcctcacaagaaaccctcttgcaaccttctcaatcttcgttgctgaatcggctctgtttctctct |
317 |
Q |
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|||||| || |||||||| ||||| ||||||||| ||||||||||||| |||||||||| ||||||||||||| ||||||| |||||||||||||||||| |
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| T |
5848103 |
ctccaccttgatcttcaacatcttcttcaaactcttcctcacaagaaaacctcttgcaaacttctcaatcttcattgctgagtcggctctgtttctctct |
5848004 |
T |
|
| Q |
318 |
g |
318 |
Q |
| |
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| |
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|
| T |
5848003 |
g |
5848003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 5848215 - 5848163
Alignment:
| Q |
94 |
taacagaatccaacctaagaagcaaattcatgattgtttcagcgatccttatc |
146 |
Q |
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|||||||||||||||||||||||||||||||||| |||| || |||||||||| |
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| T |
5848215 |
taacagaatccaacctaagaagcaaattcatgatggttttagtgatccttatc |
5848163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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