View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_low_12 (Length: 320)
Name: NF0254_low_12
Description: NF0254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 28 - 307
Target Start/End: Complemental strand, 1241043 - 1240764
Alignment:
| Q |
28 |
caatgttcctttgttacttcaaccatcttatgcaagatcaaaatccatgatctttgatgaactaagaaactttcggatatgtcttaaatggtgtgctctt |
127 |
Q |
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| T |
1241043 |
caatgttcctttgttacttcagccatcttatgcaagatcaaaatccatgatctttgatgaactaagaaactttcggatatgtcttaaatggtgtgctctt |
1240944 |
T |
|
| Q |
128 |
gatcactcatcttgtgttggaaaactcatttcttatgtttccttcatcttccttactttcattgttcctctcttcacaaccctatttgttcaagtatctg |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1240943 |
gatcactcatcttgtgttggaaaactcatttcttatgtttccttcatcttccttactttcgttgttcctctcttcacaaccctatttgttcaagtatctg |
1240844 |
T |
|
| Q |
228 |
cttcttctcctgaagttgatcctatctccttgaacaagcttgttcaaatacctgaatctgcacttgccatcatttccttc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1240843 |
cttcttctcctgaagttgatcctatctccttgaacaagcttgttcaaatacctgaatctgcacttgccatcatttccttc |
1240764 |
T |
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